Author

T. Baba

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Cancer Biology· 1 Cell Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Assay:imaging· 1

Frequent Co-Authors

N. Matsumura· 2 shared A. Berchuck· 1 shared A. Inoue· 1 shared A. Nakagawa· 1 shared A. Tsutsumi· 1 shared A. Ueda· 1 shared A. Yashizawa· 1 shared C. Toyoshima· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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2 shared papersImmunology

N. Matsumura

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

OrgaMeas: A pipeline that integrates all the processes of organelle image analysis

T. Baba, A. Inoue, S. Tanimura, K. Takeda

OrgaMeas provides a high-throughput image analysis pipeline for accurate organelle morphology and dynamics measurement using deep learning tools.

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · Jun 1, 2025Peer-reviewedCell Biology

Tertiary lymphoid structures induced by CXCL13-producing CD4+ T cells increase tumor infiltrating CD8+ T cells and B cells in ovarian cancer

M. Ukita, J. Hamanishi, H. Yoshitomi, K. Yamanoi, S. Takamatsu, A. Ueda, H. Suzuki, Y. Hosoe, Y. Furutake, M. Taki, K. Abiko, K. Yamaguchi, H. Nakai, T. Baba, N. Matsumura, , M. Mandai

This study shows that CXCL13-producing CD4+ T cells induce tertiary lymphoid structures (TLSs) in ovarian cancer, increasing CD8+ T cell and B cell infiltration and improving patient prognosis.

JCI Insight · Jun 22, 2022Peer-reviewedImmunology

An intramolecular scrambling path controlled by a gatekeeper in Xkr8 phospholipid scramblase

T. Sakuragi, R. Kanai, A. Tsutsumi, H. Narita, E. Onishi, T. Miyazaki, T. Baba, A. Nakagawa, M. Kikkawa, C. Toyoshima, S. Nagata

The paper determines the structure of Xkr8-Basigin phospholipid scramblase at 3.8 Å resolution, revealing a gatekeeper tryptophan residue essential for phospholipid scrambling.

bioRxiv · May 6, 2021Biochemistry

Targeting dormant ovarian cancer cells in vitro and in an in vivo model of platinum resistance

Z. Huang, E. Kondoh, Z. Visco, T. Baba, N. Matsumura, E. Dolan, R. S. Whitaker, I. Konishi, S. Fujii, A. Berchuck, S. K. Murphy

This study characterizes ovarian cancer spheroid phenotypes, identifies gene expression profiles linked to spheroid formation, and evaluates therapeutic responses of spheroids to various agents.

bioRxiv · Jul 26, 2019Cancer Biology