T. K. Nielsen

The paper identifies and quantifies active prophages in wheat-associated bacteria using VIP-Seq, showing their role in bacterial competition and potential impact on microbiome function.

The paper uses metaviromes to study Pseudomonas host-specific phages, showing shifts in phage communities and highlighting the value of long-read sequencing for metavirome assembly.

The paper presents the complete genome of Aminobacter sp. MSH1, revealing a polyploid chromosome, phylogenetic reassignment, and varying plasmid content between substrains.

The paper assesses how antibiotic resistance genes (ARGs) are mobilized by genetic elements and finds that some ARGs are more likely to confer resistance through overexpression than others.

The paper identifies four glacier bacteria capable of dual phototrophy using bacteriochlorophyll and rhodopsin, showing genomic evidence of horizontal gene transfer for these systems.