Author

W. Bae

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Bioengineering· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 3 Approach:experimental assay· 3 Research Focus:synaptic & neural circuits· 3 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1

Frequent Co-Authors

G.-B. V. Stan· 3 shared T. E. Ouldridge· 3 shared J. Cabello-Garcia· 2 shared A. Sengar· 1 shared F. J. Giles· 1 shared F. Smith· 1 shared J. F. Anker· 1 shared J. Goertz· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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3 shared papersBiophysics

G.-B. V. Stan

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Information propagation through enzyme-free catalytic templating of DNA dimerization with weak product inhibition

J. Cabello-Garcia, R. Mukherjee, W. Bae, G.-B. V. Stan, T. E. Ouldridge

This study presents an enzyme-free DNA templating system that produces sequence-specific dimers with weak product inhibition, demonstrating a design principle for information propagation through molecular templating.

bioRxiv · Aug 23, 2023Bioengineering

Overcoming the speed limit of four-way DNA branch migration with bulges in toeholds

F. Smith, A. Sengar, G.-B. V. Stan, T. E. Ouldridge, M. Stevens, J. Goertz, W. Bae

This paper introduces a method to enhance four-way DNA exchange reaction kinetics by adding bulges to toeholds, making it faster and more efficient, closer to three-way reactions.

bioRxiv · May 15, 2023 · PreprintBiophysics

Handhold-mediated strand displacement: a nucleic acid-based mechanism for generating far-from-equilibrium assemblies through templated reactions

J. Cabello-Garcia, W. Bae, G.-B. V. Stan, T. E. Ouldridge

This paper introduces handhold-mediated strand displacement (HMSD) as a method to enable templating in nucleic acid reactions, demonstrating its ability to accelerate and control DNA duplex assembly.

bioRxiv · May 22, 2020Biophysics

Landscape of tumor-infiltrating immune cells in human immunogenic cancers: B cells are inversely associated with CD8T cells, but positively correlated with Treg cells

Y. K. Chae, W. Bae, M. Jung, Y. S. Kim, J. F. Anker, K. Tamragouri, M. Matsangou, F. J. Giles

The paper analyzes immune cell infiltration in six cancers, finding activated B cells correlate with reduced CD8 T cell infiltration and increased Treg cells, suggesting B cells may inhibit T cell activity.

bioRxiv · May 17, 2019 · PreprintCancer Biology