Artyom Kopp

The paper shows that second-site modifiers alter dominance in a Mendelian trait by changing environmental plasticity across species.

The paper develops a framework to identify transcript orthologs across Drosophila species, revealing conserved sex-biased alternative transcripts and their potential role in sexual conflict resolution.

This study shows that the Drosophila sex comb evolved through changes in developmental tempo and energy metabolism, not by co-opting new genes into downstream networks.

The paper presents a single-nucleus RNA sequencing atlas of Aedes aegypti mosquitoes, identifying novel cell types and sexual dimorphism in gene expression across tissues.

This paper shows that the evolution of dominance in a Mendelian trait is linked to changes in phenotypic plasticity, specifically in the pdm3 gene across Drosophila species.

This study identifies a regulatory change in the fatty acid elongase eloF as the genetic basis for sex-specific pheromone profile evolution in Drosophila prolongata.

The paper develops Bayesian methods to quantify transcriptome turnover across species, finding accelerated gene expression changes in testes and accessory glands of Drosophila species.

This study identifies young, polymorphic de novo genes in Drosophila melanogaster by sequencing tissue-specific transcriptomes, revealing their transient nature and challenges in reconstructing their origin.

The paper presents 183 new genome assemblies for 179 drosophilid species using single-fly long-read sequencing, improving phylogenomic coverage and enabling a well-resolved multi-locus phylogeny.

The paper presents a highly contiguous genome assembly of Drosophila prolongata, enabling genomic analyses for studying sexual dimorphism and male-specific traits.

This study uses single-cell RNA sequencing to analyze the development of Drosophila leg sensory organs, identifying cell types and gene expression patterns that define mechanosensory and chemosensory neurons.

This paper introduces a hierarchical Bayesian mixture model to infer gene expression states from transcriptomic data, showing high accuracy in both simulated and empirical datasets.

This paper investigates the evolution of sexual development in insects by analyzing dsx and tra expression in three hemimetabolous insect orders, revealing a gradual, mosaic evolution of the tra-dsx splicing cascade.

The paper identifies modular cis-regulatory elements that control doublesex expression in sexually dimorphic structures in Drosophila legs and genitalia.

The paper de novo assembles the Drosophila serrata genome using long-read sequencing and self-correction algorithms, achieving high contiguity and providing initial gene annotations.