Seth J Davis

TimeTraits extracts functional traits from biological time-series data using Functional Data Analysis methods, applied to circadian clock bioluminescence in Arabidopsis.

This study shows ELF4 recruits ELF3 to the nucleus at dusk, enhancing its gene repression activity in Arabidopsis hypocotyls and roots.

This study shows ELF3 regulates trait heterogeneity by affecting maturation rates in Arabidopsis and barley, influencing stress resilience through bet hedging.

This study examines gene expression patterns in Arabidopsis over diurnal and developmental timescales, finding greater developmental variation than diurnal oscillations, particularly in energy-related genes.

The paper identifies QTLs linked to circadian rhythms and flowering time in Arabidopsis, showing their role in synchronizing developmental timing and adapting to climate change.

This study uses single-plant-transcriptomics to uncover the transcriptional cascade during the vegetative-to-reproductive transition in Arabidopsis thaliana, revealing both binary and continuous developmental processes.

This study identifies daily and 16-hour gene expression rhythms in C. elegans using RNA-seq, revealing both circadian and novel oscillatory patterns.

The paper investigates photoperiodic memory in Arabidopsis and Brassicaceae, finding that hypocotyl elongation is influenced by past photoperiod exposure and involves phyB and ELF3, but not the circadian clock.

The paper combines single-cell RNA-seq and bulk time-series data to create an Arabidopsis leaf expression atlas showing cell-type-specific gene expression changes over time.

The paper investigates the genetic interactions between ELF3, PRR9, and PRR7 in Arabidopsis, revealing complex epistatic relationships affecting circadian rhythms and plant development.

This study resolves the complex phylogenetic relationships within Galdieria by analyzing genome-scale data from multiple strains, revealing divergent lineages and incongruent interlineage relationships across organellar and nuclear genomes.

The paper compares whole-genome sequences of three Galdieria sulphuraria strains, revealing structural rearrangements and a high number of nuclear chromosomes associated with adaptability in extreme environments.

This paper expresses human tau proteins in specific Drosophila clock circuits and shows how it disrupts sleep and circadian rhythms in different ways.

Tapestry validates and edits small eukaryotic genome assemblies using long reads by generating an interactive report for contig analysis.