Kristin Burnum-Johnson

ChatGEM enables interactive simulation of genome-scale metabolic models via natural language, improving performance and reducing execution time for complex tasks.

This study uses multi-omics analysis to show that dysregulated lung epithelial cell homeostasis and immune responses drive severe MERS-CoV disease in mice.

The paper examines lipidomic changes in maternal blood and placental tissue in obesity and gestational diabetes, revealing sexually dimorphic effects in placental fatty acid composition.

This paper introduces a fast and sensitive size-exclusion chromatography method for plasma extracellular vesicle proteomic analysis, demonstrating its utility in identifying EV proteins related to physical activity.

The paper develops a spatial proteomics method to map the human pancreatic islet microenvironment and identifies spatial gradients in RNA processing proteins.

This paper introduces a de novo metaproteomics pipeline using a deep learning model to identify soil microbiome composition and functions without relying on metagenomic data.

This study uses lipidomics to analyze leaf-cutter ant fungal gardens, showing lipids play roles in energy transfer and inter-kingdom communication through differential fatty acid responses.

The paper investigates lipid composition changes in insulitis models and identifies ARH3 as a regulator of beta-cell apoptosis through PLA2G6 signaling.

The paper investigates substrate-specific phosphorylation events in Neurospora crassa during early plant cell wall recognition using phospho-proteomics and identifies key signaling pathways and proteins involved.