Carrie Nicora

The paper describes engineered algal lipids that mimic the fatty acid profile and regioisomeric structure of human milk fat for infant formula.

This study investigates how circadian rhythms affect macrophage responses to SARS-CoV-2 spike proteins, finding that timing of exposure leads to distinct immunometabolic states.

This study identifies a novel methanogen from the Great Salt Lake that remains active under environmental stress and contributes to methane flux.

This study shows that copper deficiency in Chlamydomonas reinhardtii increases SAD expression, leading to changes in fatty acid composition and growth, with FDX5 playing a role in electron transfer for lipid desaturation.

The paper quantifies protein abundances and stoichiometries in Chlamydomonas reinhardtii during the cell cycle using the total protein approach.

The paper introduces a 'mono-mix' strategy to improve proteomic analysis of cross-kingdom microbial symbiosis by addressing detection biases in coculture.

This study shows Chlamydomonas reinhardtii can rapidly reprogram its photoprotective strategies in response to changes in diurnal light intensity, with LL-acclimated cells recovering faster than HL-acclimated cells.

The paper shows Fe starvation in green algae leads to a second LHCI tetramer associated with PSI, similar to cyanobacteria's isiA antenna ring.

This study shows that maternal obesity alters lipid metabolism, metabolomics, and gene expression in bone marrow myeloid cells of offspring, potentially contributing to adult metabolic and cardiovascular disease risk.

The paper examines lipidomic changes in maternal blood and placental tissue in obesity and gestational diabetes, revealing sexually dimorphic effects in placental fatty acid composition.

This study shows omega-3 fatty acids reduce CXCL9 expression in MIN6 cells via ARH3, potentially protecting beta cells from immune attack and preventing T1D.

The paper analyzes how Chlamydomonas adapts its gene expression and proteomic profiles to different light conditions, revealing constitutive phenotypes that persist through the night.

This study investigates changes in human milk composition after SARS-CoV-2 infection or vaccination using multi-omics approaches, finding greater compositional changes post-infection than post-vaccination.

The paper curates a database of gut microbial genes linked to trimethylamine-induced cardiovascular disease and validates its predictive power using fecal metatranscriptome and metaproteome data.

The paper analyzes two extremophilic algae to understand their iron management strategies, identifying novel iron-uptake proteins and adaptive mechanisms that enable survival in low-iron environments.

This paper introduces a de novo metaproteomics pipeline using a deep learning model to identify soil microbiome composition and functions without relying on metagenomic data.

The paper constructs a comprehensive urine proteome database from diverse renal and prostate cancer conditions, identifying potential biomarkers and unique proteins.

This study uses lipidomics to analyze leaf-cutter ant fungal gardens, showing lipids play roles in energy transfer and inter-kingdom communication through differential fatty acid responses.

The paper develops a machine learning workflow for auto-deconvolution of GC-MS data within GNPS, enabling molecular networking and applications in breathomics and volatilome mapping.

The paper investigates lipid composition changes in insulitis models and identifies ARH3 as a regulator of beta-cell apoptosis through PLA2G6 signaling.

The paper investigates substrate-specific phosphorylation events in Neurospora crassa during early plant cell wall recognition using phospho-proteomics and identifies key signaling pathways and proteins involved.

The paper uses multimodal imaging and multi-omics techniques to study O. tauri's cellular responses to nitrogen and carbon ratio changes, revealing shifts in lipid and starch metabolism.

The paper compares multi-omics data to show that metabolome biochemistry, not microbiome composition or gene expression, correlates with elevated biogeochemical function in hyporheic zones.