Author

Pernille Yde Rainer

SIB Swiss Institute of BioinformaticsORCID 0000-0002-3559-4414Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:mouse· 2 Assay:scRNA-seq· 2 Research Focus:trajectory inference· 2 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Bart DeplanckeiD· 2 shared Wanze CheniD· 2 shared Angelika GebhartiD· 1 shared Antoni J. GralakiD· 1 shared Christoph G. GäbeleiniD· 1 shared Guido van MierloiD· 1 shared Julia A. VorholtiD· 1 shared Julie RusseiliD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersCell Biology

Bart DeplanckeORCID

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2 papers

Recent·Most cited

Cell BiologyNature GeneticsPeer-reviewedOct 1, 2025

Dissecting reprogramming heterogeneity at single-cell resolution using scTF-seq

Wangjie Liu, Wouter Saelens, Pernille Yde Rainer…·Bart Deplancke

The paper introduces scTF-seq, a method to study TF dose-dependent reprogramming in mouse MSCs, revealing heterogeneity in cell fate and TF sensitivity.

27 citationstop 3%

mousescRNA-seq

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Molecular BiologybioRxivPreprintMar 24, 2021

Genome-wide molecular recording using Live-seq

Wanze Chen, Orane J. Guillaume-Gentil, Riccardo Dainese…·Bart Deplancke

The paper introduces Live-seq, a method for single-cell transcriptome profiling that preserves cell viability, enabling temporal analysis of gene expression and cell behavior.

13 citations

mousescRNA-seq

𝕏 PostBluesky