Silvia Naranjo

The paper uses single-cell multiomics to identify key regulatory nodes and cis-regulatory elements in zebrafish eye development.

The paper identifies ancestral dorsal-ventral patterning mechanisms in fish fins and shows evolutionary innovations in their regulation.

This study identifies neotenic transcriptomic features in the adult turquoise killifish brain, showing embryonic gene expression patterns and their potential role in maintaining high proliferation and metabolic rates.

The paper constructs a single-cell RNA-seq atlas of amphioxus neurula stage to investigate the evolutionary origins of vertebrate head mesoderm.

The paper compares 3D genome structures between neural retina and RPE to identify tissue-specific cis-regulatory interactions at retinal disease loci.

This study investigates the effects of retinoic acid signaling on the epigenome and chromatin architecture during zebrafish embryonic development using multi-omics approaches.

The paper creates a central repository for zebrafish developmental genomics data, identifies new cis-regulatory elements, and compares regulatory elements between zebrafish and mouse.

The paper analyzes gene network bifurcation during optic cup morphogenesis in zebrafish, identifying regulatory mechanisms and conserved TF recruitment sequences in RPE specification.