Author

Olivier Lespinet

Centre National de la Recherche ScientifiqueORCID 0000-0002-4961-7461Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1

Frequent Co-Authors

Mélina GallopiniD· 2 shared Paul BastideiD· 2 shared Amélie Garénaux· 1 shared Annabelle ThibessardiD· 1 shared Arnaud LiehrmanniD· 1 shared Bertrand AigleiD· 1 shared Charlotte SonesoniD· 1 shared Cláudia M. VicenteiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersEvolutionary Biology

Mélina GallopinORCID

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3 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintJul 3, 2026

Interspecies Differential Gene Expression Analysis with Regularized Phylogenetic Linear Models

Mélina Gallopin, Maëlle Daunesse, Olivier Lespinet…·Paul Bastide

This paper introduces phyloDE, a method for interspecies differential gene expression analysis that controls FDR and identifies more DE genes with consistent cis-regulatory changes.

1 citation

mousebulk RNA-seq

𝕏 PostBluesky

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedApr 4, 2024

SYNTERUPTOR: mining genomic islands for non-classical specialised metabolite gene clusters

Drago Haas, Matthieu Barba, Cláudia M. Vicente…·Sylvie Lautru

SYNTERUPTOR identifies genomic islands containing specialised metabolite gene clusters in microbial genomes, detecting clusters missed by existing tools.

5 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

BioinformaticsMolecular Biology and EvolutionPeer-reviewedDec 12, 2022

Benchmark of Differential Gene Expression Analysis Methods for Inter-species RNA-Seq Data using a Phylogenetic Simulation Framework

Paul Bastide, Charlotte Soneson, David Stern…·Mélina Gallopin

This paper benchmarks differential gene expression analysis methods for inter-species RNA-Seq data using a phylogenetic simulation framework to evaluate their performance across species.

8 citations

multiple speciesbulk RNA-seq

𝕏 PostBluesky