Guanxiang Liang

PIDE detects prophages in bacterial genomes and metagenomes with high accuracy using a protein language model and gene density clustering.

FEDKEA improves enzyme function prediction by combining a pretrained protein language model with distance-weighted k-nearest neighbor, outperforming existing tools.

iVirP is a pipeline for annotating viral contigs from metagenome or VLP sequencing data, improving accuracy and efficiency in virome analysis.

ESM-PVP uses a pretrained protein language model and an MLP to identify and classify phage virion proteins, outperforming previous methods on a new benchmark dataset.

This study shows MOV10 restricts LINE1 retrotransposition in mice in a dosage-dependent manner, affecting reproductive fitness and transcriptome regulation.