Benjamin Judkewitz

Region-stratified scRNA-seq of 607,370 cells plus 500-gene MERFISH maps adult Danionella cerebrum cell types body-wide, revealing fibroblast Hox and limb-identity programs and telencephalon regeneration dynamics.

The paper shows that vocal call categorization in Danionella is distributed across multiple brain regions rather than localized to a single area.

The paper creates a multimodal reference brain atlas for adult Danionella cerebrum, integrating anatomical, molecular, and functional data to study brain structure and sexual dimorphism.

The paper introduces a model that quantitatively predicts directional hearing in fish by analyzing phase differences in sound pulses and their effect on startle responses.

The paper introduces WHOLISTIC, a method to image cellular activity across all organs of a vertebrate, revealing body-wide circuits and responses to stimuli.

This study shows binge feeding increases food intake by suppressing olfactory flavor representation in the anterior piriform cortex through specific neuronal activity patterns.

The paper introduces FLIPR, a remote focusing technique that improves light efficiency and enables high-speed volumetric voltage imaging at 500 volumes per second.

This paper introduces SPARCLS, a high-speed 3D random-access scanning method achieving 340 kHz point rate, and demonstrates its application in imaging synaptic events in mammalian and zebrafish models.

This study examines the ontogeny of sound production in Danionella cerebrum, finding that click production begins in the second month of life and increases in abundance and structure over the next one to two months.

This paper introduces a new imaging technique to achieve brain-wide neuronal activity recording in adult vertebrates.

This study compares swimming patterns and neuronal circuits in two closely related fish species to understand how environmental factors drive evolutionary divergence in locomotion.

The paper presents the hybrid genome assembly and annotation of Danionella translucida, a small transparent vertebrate with a rich behavioral repertoire.