John G. Gibbons

SyntenyPair Explorer provides an interactive, browser-based tool for visualizing synteny between two genomes without requiring installation or server infrastructure.

This study compares phenotypic, metabolomic, and genomic variation between two Aspergillus species to determine factors distinguishing opportunistic pathogens from non-pathogens.

This study compares volatile metabolomes and flavor attributes of rice fermented by Aspergillus oryzae and Aspergillus flavus, finding A. oryzae produces more desirable sensory compounds.

This paper identifies population-specific transcriptomic shifts in Aspergillus species, showing how transcriptomic reorganization drives secondary metabolic diversification and domestication in A. oryzae.

This study examines how long-term use of Aspergillus sojae in soy fermentation shaped its population structure, genome variation, and phenotypic traits, revealing reduced genetic diversity and loss of aflatoxin production.

This study mutagenizes L. monocytogenes to identify genetic mechanisms conferring increased tolerance to benzalkonium chloride, revealing off-target antibiotic resistance.

The paper examines genome-wide ortholog variation in 206 A. fumigatus isolates, finding no significant differences in ortholog distribution between clinical and environmental isolates after accounting for phylogeny.

This study uses genome-wide association analysis to identify genetic loci associated with itraconazole sensitivity in Aspergillus fumigatus clinical isolates, finding two SNPs linked to susceptibility and validating one through CRISPR/Cas-9 knockout.