Peter L. Horvatovich

The paper introduces DIA-NN EasyFilter, a KNIME-based workflow for simplifying and visualizing DIA-NN proteomics results, enhancing usability without coding skills.

This study investigates how O-mannose glycosylations on E-cadherin affect its protein interactions, showing O-Man-dependent changes in CDH1 associations with CDH3 and other proteins.

GlycoGenius automates glycan analysis from mass spectrometry data, reducing manual effort and processing time while identifying more glycans, including novel ones.

The paper profiles serum N-glycans in GSD Ia and Ib patients and controls, identifying subtype-specific glycomic alterations and potential biomarkers for disease subtyping and tumor surveillance.

This study identifies protein expression differences in serum associated with fibrosis and inflammation in bronchiolitis obliterans syndrome after lung transplantation.

The paper identifies fibroblast-derived osteoglycin as a key factor promoting epithelial cell repair and presents its active fragment as a potential therapeutic for lung diseases.

This study integrates histopathology and proteogenomic data from melanoma metastases to identify subtypes and risk factors, offering a basis for personalized treatment strategies.

This paper identifies potential drug targets and predicts treatment efficacy and resistance in melanoma subtypes using proteogenomic data and drug sensitivity analysis.

The paper identifies six proteins that predict response to immune checkpoint therapy across three melanoma cohorts and correlate with patient survival.

WOMBAT-P benchmarks label-free proteomics workflows by comparing four analysis pipelines using standardized metrics and datasets.

This study identifies ECM gene and protein changes in COPD lung tissue linked to cellular senescence, confirming in vivo associations previously observed in vitro.

This study identifies seven age-associated ECM proteins with increased expression in human lung tissue and demonstrates age-related differences in specific lung compartments.