Author

Hunter O. Woosley

Chan Zuckerberg Biohub San FranciscoORCID 0009-0002-8097-8561Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

Carolina AriasiD· 3 shared Alejandro MatíaiD· 2 shared Shalin B. MehtaiD· 2 shared Soorya PradeepiD· 2 shared Vincent Turon‐LagotiD· 2 shared Adrián JacoboiD· 1 shared Akilandeswari BalasubramanianiD· 1 shared Chad LiuiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersMicrobiology

Carolina AriasORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintApr 9, 2026

V-SWITCH: A single-vector OFF-to-ON fluorescent reporter of live RNA virus infections

Miguel Cid-Rosas, Michelle E. Grunberg, Alejandro Matía…·Carolina Arias

V-SWITCH is a fluorescent reporter that detects viral infections by switching from OFF to ON fluorescence, enabling live-cell tracking and screening for antiviral strategies.

DOI 10.64898/2026.04.08.717260

fluorescence / live-cell microscopyexperimental assay

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 31, 2024

Robust virtual staining of landmark organelles

Ziwen Liu, Eduardo Hirata-Miyasaki, Soorya Pradeep…·Shalin B. Mehta

The paper develops robust virtual staining methods for cellular landmarks using deep learning, showing improved performance across cell types and imaging conditions.

6 citations

humanzebrafish

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MicrobiologybioRxivPreprintJan 13, 2024

Spatio-temporal analysis of Vaccinia virus infection and host response dynamics using single-cell transcriptomics and proteomics

Alejandro Matía, Frank McCarthy, Hunter O. Woosley…·Marco Y. Hein

This study uses single-cell transcriptomics and proteomics to analyze Vaccinia virus infection dynamics and host response heterogeneity in HeLa and fibroblast cells.

4 citations

humanscRNA-seq

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