Author

Nachiket Shankar

University of Massachusetts BostonORCID 0009-0004-9785-3997Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Ecology· 1

Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 2 Approach:experimental assay· 2 Assay:scRNA-seq· 2 Organism:Arabidopsis· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1

Frequent Co-Authors

Argenis ArriojasiD· 2 shared Jingjing LouiD· 2 shared Kourosh ZarringhalamiD· 2 shared Manoj T. DuraisinghiD· 2 shared Marc‐Jan GubbelsiD· 2 shared Yihan WuiD· 2 shared Caroline D. KeroackiD· 1 shared David DegrasiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersMicrobiology

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintOct 30, 2026

A MultiOmics time-resolved systems map of gene regulation in Toxoplasma gondii

Yihan Wu, Argenis Arriojas, Nachiket Shankar…·Marc‐Jan Gubbels

This study creates a time-resolved multi-omics map of gene regulation in Toxoplasma gondii by integrating perturbation data with single-cell measurements, revealing regulatory networks and novel interactions.

DOI 10.64898/2026.10.29.762658

scRNA-seqATAC-seq

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MicrobiologyNature CommunicationsPeer-reviewedAug 28, 2024

Single cell expression and chromatin access of the Toxoplasma gondii lytic cycle identifies AP2XII-8 as an essential pivotal controller of a ribosome regulon

Jingjing Lou, Yasaman Rezvani, Argenis Arriojas…·Marc‐Jan Gubbels

The paper maps transcriptional and chromatin changes during the Toxoplasma gondii lytic cycle, identifying AP2XII-8 as a key regulator of a ribosome regulon.

22 citationstop 1%

humanscRNA-seq

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EcologybioRxivPreprintSep 6, 2023

Multi-Generation Selection of Rhizosphere Ecosystem Associated with Plant Genotype and Biomass in Arabidopsis thaliana

Nachiket Shankar, Prateek Shetty, Tatiana C Melo, Rick Kesseli

The paper selects soil microbiomes in Arabidopsis thaliana over eight generations to study how plant genotype and biomass influence microbial community composition.

DOI 10.1101/2023.09.06.556126

Arabidopsismetagenomics

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