A GWAS platform built on iPlant cyber-infrastructure
Liya WangiD, Doreen WareiD, Carol Lushbough, Nirav Merchant, Lincoln Stein
Abstract
We demonstrated a flexible Genome-Wide Association Study (GWAS) platform built upon the iPlant Collaborative Cyber-infrastructure. The platform supports big data management, sharing, and large scale study of both genotype and phenotype data on clusters. End users can add their own analysis tools, and create customized analysis workflows through the graphical user interfaces in both iPlant Discovery Environment and BioExtract server.
02 /Specification & Classification
Click any tag to browse matching papers- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Analyzing bivariate cross-trait genetic architecture in GWAS summary statistics with the BIGA cloud computing platform
Yujue Li, Fei Xue, … Bingxin Zhao·bioRxiv·Apr 28, 2023
- GWASHub: An Automated Cloud-Based Platform for Genome-Wide Association Study Meta-Analysis
Nicholas P. Sunderland, Drew Hite, … R Thomas Lumbers·medRxiv·Oct 21, 2025
- GWAIS-Web: A Fast and Secure Web Service for Epistasis Detection in Genome-wide Association Interaction Studies
Lars Wienbrandt, Christoph Prieß, David Ellinghaus·bioRxiv·May 16, 2023
- The MRC IEU OpenGWAS data infrastructure
Benjamin Elsworth, Matthew Lyon, … Gibran Hemani·bioRxiv·Aug 10, 2020
- GWAShub: A Web-based Resource to Democratize Genome-Wide Association Studies in Crop Plants
Anurag Daware, Rishi Srivastava, … Swarup Kumar Parida·bioRxiv·Feb 3, 2022
- SAGA (Simplified Association Genomewide Analyses): a user-friendly Pipeline to Democratize Genome-Wide Association Studies
Basilio Cieza, Neetesh Pandey, … Giuseppe Tosto·bioRxiv·Aug 25, 2025