Author

B. Cakir

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 3 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Approach:experimental assay· 2 Assay:scRNA-seq· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:clustering· 1

Frequent Co-Authors

A. Predeus· 2 shared P. Mazin· 2 shared S. A. Teichmann· 2 shared A. A. Ritchie· 1 shared A. Bills· 1 shared A. Haiser· 1 shared A. Infeld· 1 shared A. Shin· 1 shared

Activity by Year

2022-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersCell Biology

A. Predeus

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Generation of transplantable and biologically responsive colonic tissue from human induced pluripotent stem cells using a rapid co-differentiation platform.

W. Dalleywater, A. V. Predeus, B. Cakir, P. Mazin, J. Vadakekolathu, S. Rutella, M. L. Meakin, A. A. Ritchie, S. Montazid, S. Cuevas Ocana, N. Holmes, V. Wright, F. Seng, A. Bills, D. Sculthorpe, , M. Ilyas

This paper develops a co-differentiation platform using human iPSCs to generate transplantable colonic tissue that mimics native mucosa and responds to biological signals.

bioRxiv · Dec 8, 2023 · PreprintCell Biology

CZ CELLxGENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data

CZI Single-Cell Biology, S. Abdulla, B. Aevermann, P. Assis, S. Badajoz, S. M. Bell, E. Bezzi, B. Cakir, J. Chaffer, S. Chambers, J. M. Cherry, T. Chi, J. Chien, L. Dorman, N. Gloria, , Tolop

CZ CELLxGENE Discover provides a platform for scalable exploration and analysis of aggregated single-cell transcriptomic data across multiple studies.

bioRxiv · Oct 30, 2023 · PreprintCell Biology

Multi-scale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma

C. Ganier, P. Mazin, G. Herrera-Oropeza, X. Du-Harpur, M. Blakeley, J. Gabriel, A. Predeus, B. Cakir, M. Prete, N. Harun, J.-F. Darrigrand, A. Haiser, S. Wyles, T. J. Shaw, S. A. Teichmann, , M. D. Lynch

The paper creates a multi-scale spatial atlas of healthy human skin and basal cell carcinoma using various omics and imaging techniques, revealing cell population localization and origins.

bioRxiv · Aug 8, 2023 · PreprintCell Biology

Mechano-inhibition of Endocytosis Sensitizes Cancer Cells to Fas-induced Apoptosis

M. Kural, U. Djakbarova, B. Cakir, Y. Tanaka, Y. Madraki, E. T. Chan, V. Arteaga Muniz, H. Qian, J. Park, L. Sewanan, I.-H. Park, L. Niklason, C. Kural

The paper shows that inhibiting endocytosis with fasudil increases Fas microaggregate formation, making cancer cells more sensitive to FasL-induced apoptosis.

bioRxiv · Jun 14, 2022 · PreprintCancer Biology