Author

C. Coruh

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3 Cancer Biology· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:Arabidopsis· 2 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:clustering· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2

Frequent Co-Authors

G. Xu· 2 shared J. A. Law· 2 shared J. Luebeck· 2 shared N. R. Johnson· 2 shared P. S. Mischel· 2 shared S. R. Dehkordi· 2 shared T. Phifer· 2 shared V. Bafna· 2 shared

Activity by Year

2017-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersCancer Biology

G. Xu

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Author profile →

5 papers

Recent·Most cited

Breakage fusion bridge cycles drive high oncogene copy number, but not intratumoral genetic heterogeneity or rapid cancer genome change

S. R. Dehkordi, I. T.-L. Wong, J. Ni, J. Luebeck, K. Zhu, G. Prasad, L. Krockenberger, G. Xu, B. Chowdhury, U. Rajkumar, A. Caplin, D. Muliaditan, C. Coruh, Q. Jin, K. Turner, , V. Bafna

The paper introduces OM2BFB, an algorithm detecting BFB amplifications using OGMs, showing high precision and recall, and finds BFB events are common in certain cancers but not linked to intratumoral heterogeneity or rapid genome change.

bioRxiv · Dec 12, 2023 · PreprintCancer Biology

Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH

K. L. Hung, J. Luebeck, S. R. Dehkordi, C. Coruh, J. A. Law, W. J. Greenleaf, P. S. Mischel, V. Bafna, H. Y. Chang

This study introduces CRISPR-CATCH, a method to purify and analyze extrachromosomal DNA, revealing hypomethylation and structural details of ecDNA in cancer cells.

bioRxiv · Nov 28, 2021Cancer Biology

The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis

M. Zhou, C. Coruh, G. Xu, C. Bourbousse, A. Lambolez, J. A. Law

This study identifies CLASSY1-4 as key regulators of tissue-specific DNA methylation in Arabidopsis, showing their role in shaping epigenetic diversity during development.

bioRxiv · Jan 23, 2021Plant Biology

Integrated annotations and analyses of small RNA-producing loci from 47 diverse plants

A. Lunardon, N. R. Johnson, E. Hagerott, T. Phifer, S. Polydore, C. Coruh, M. J. Axtell

The paper annotates and analyzes sRNA-producing loci in 47 plants using sRNA-seq data, identifying over 2.7 million loci and characterizing their genomic distribution and conservation.

bioRxiv · Sep 4, 2019Plant Biology

MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs

S. Shahid, G. Kim, N. R. Johnson, E. Wafula, F. Wang, C. Coruh, V. Bernal-Galeano, T. Phifer, C. W. dePamphilis, J. H. Westwood, M. Axtell

This study identifies microRNAs from the parasitic plant Cuscuta campestris that target host mRNAs, leading to mRNA cleavage and reduced accumulation, and suggests they may function as virulence factors.

bioRxiv · Sep 29, 2017Plant Biology