Author

C. Koepfli

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5

Signature Assays, Organisms & Methods

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Organism:plant (other)· 4 Assay:DNA methylation· 3 Approach:experimental assay· 3 Approach:statistical model· 3 Research Focus:host-pathogen & immune response· 2 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

A. Lerch· 3 shared I. Mueller· 3 shared I. Betuela· 2 shared I. Felger· 2 shared J. H. Kattenberg· 2 shared A. E. Dent· 1 shared A. Githeko· 1 shared A. Jex· 1 shared

Activity by Year

2017-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersMicrobiology

A. Lerch

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Author profile →

5 papers

Recent·Most cited

Systematic review of Plasmodium falciparum and Plasmodium vivax polyclonal infections: Impact of prevalence, study population characteristics, and laboratory procedures

L. Lopez, C. Koepfli

This study reviews polyclonal infections of Plasmodium falciparum and P. vivax, finding that prevalence correlates with polyclonality but the relationship is weak.

bioRxiv · Mar 18, 2021Microbiology

Plasmodium falciparum increases its investment in gametocytes in the wet season in asymptomatic individuals

C. O. Aduma, S. Ogolla, H. Atieli, B. N. Ondigo, M.-C. Lee, A. Githeko, A. E. Dent, J. W. Kazura, G. Yan, C. Koepfli

The paper shows that Plasmodium falciparum increases gametocyte density in the wet season among asymptomatic individuals, despite lower gametocyte prevalence.

bioRxiv · Aug 4, 2020Microbiology

Transcriptome and histone epigenome of Plasmodium vivax salivary-gland sporozoites point to tight regulatory control and potential mechanisms for liver-stage differentiation.

A. Jex, I. Mueller, S. Kappe, S. Mikolajcjak, J. Sattabongkot, R. Patrapuvich, S. Lindner, E. Flannery, C. Koepfli, B. Ansell, A. Lerch, K. E. Swearingen, S. J. Emery-Corbin, S. Charnaud, J. Smith, , V. Chuenchob

This study characterizes the transcriptome and histone epigenome of Plasmodium vivax sporozoites, revealing transcriptional and post-transcriptional control mechanisms and potential pathways for hypnozoite formation.

bioRxiv · Dec 3, 2018 · PreprintMicrobiology

Longitudinal tracking of Plasmodium falciparum clones in complex infections by amplicon deep sequencing

A. Lerch, C. Koepfli, N. E. Hofmann, J. H. Kattenberg, A. Rosanas-Urgell, I. Betuela, I. Mueller, I. Felger

This study compares Amp-Seq and length-polymorphism genotyping for tracking Plasmodium falciparum clones in longitudinal infections, finding Amp-Seq more sensitive for detecting minority clones.

bioRxiv · Apr 30, 2018Microbiology

Development Of Amplicon Deep Sequencing Markers And Data Analysis Pipeline For Genotyping Multi-Clonal Malaria Infections

A. Lerch, C. Koepfli, N. Hofmann, C. Messerli, S. Wilcox, J. H. Kattenberg, I. Betuela, L. O'Connor, I. Mueller, I. Felger

The paper develops amplicon deep sequencing markers and a pipeline for genotyping multi-clonal malaria infections, showing improved sensitivity for detecting minority clones.

bioRxiv · Apr 3, 2017Microbiology