Author

D. Endy

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Bioengineering· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Assay:proteomics· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

A. J. Maheshwari· 2 shared A. M. Sunol· 2 shared R. N. Zia· 2 shared A. Chemparathy· 1 shared A. Goyal· 1 shared D. B. Lewis· 1 shared E. Gonzalez· 1 shared G. Dhamdhere· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersBiophysics

A. J. Maheshwari

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Genome-Wide Transcription Response of Staphylococcus epidermidis to Heat Shock and Medically Relevant Glucose Levels

K. N. Benjamin, A. Goyal, R. V. Nair, D. Endy

This study quantifies gene expression changes in Staphylococcus epidermidis under varying glucose and temperature conditions, identifying glucose-responsive genes and a heat-shock response similar to related species.

bioRxiv · Mar 18, 2024 · PreprintMicrobiology

Ultra-weak protein-protein interactions can modulate proteome-wide searching and binding

J. L. Hofmann, A. J. Maheshwari, A. M. Sunol, D. Endy, R. N. Zia

The paper estimates ultra-weak protein-protein interactions and shows they can drive transient clusters and enhance protein association sampling in dense suspensions.

bioRxiv · Sep 30, 2022 · PreprintBiophysics

Colloidal physics modeling reveals how per-ribosome productivity increases with growth rate in E. coli

A. J. Maheshwari, A. M. Sunol, E. Gonzalez, D. Endy, R. N. Zia

The paper models E. coli cytoplasm to show that physical crowding and transport improve ribosome productivity with growth rate.

bioRxiv · Oct 27, 2021 · PreprintBiophysics

Development of CRISPR as a prophylactic strategy to combat novel coronavirus and influenza

T. R. Abbott, G. Dhamdhere, Y. Liu, X. Lin, L. E. Goudy, L. Zeng, A. Chemparathy, S. Chmura, N. Heaton, R. Debs, T. Pande, D. Endy, M. La Russa, D. B. Lewis, L. S. Qi

This paper develops a CRISPR-Cas13-based strategy called PAC-MAN to inhibit SARS-CoV-2 and influenza A virus in human cells, showing it can degrade viral sequences and reduce replication.

bioRxiv · Mar 13, 2020 · PreprintBioengineering