E. Karaca

So close yet so far apart: Distinct flanking sequence recognition by DNMT3A and DNMT3B

This study compares DNMT3A and DNMT3B to show how they recognize different flanking sequences through distinct mechanisms.

Dynamic proximity interaction profiling suggests that YPEL2 is involved in cellular stress surveillance

The paper identifies YPEL2's interaction partners using TurboID-coupled mass spectrometry, revealing its role in RNA metabolism and stress response.

Differential occupancy and regulatory interactions of KDM6A in bladder cell lines

This study examines KDM6A occupancy and regulatory interactions in bladder cells, revealing differential binding patterns and potential interactors in normal and cancer settings.

Rapid and Efficient Ambient Temperature X-ray Crystal Structure Determination at Turkish Light Source

The paper introduces a plate-reader module for rapid ambient temperature X-ray crystallography at a home source and reports the first lysozyme structure determined at Turkish DeLight.

Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source: Turkish DeLight

The paper describes the setup and application of a new X-ray crystallography facility in Turkey for structural analysis of biomacromolecules using lysozyme as a model.

Differential Histone-DNA Interactions Dictate Nucleosome Recognition of the Pioneer Transcription Factor Sox

This study shows that Sox PTF recognizes nucleosomes through distinct histone-DNA interactions, with specific reading mechanisms at different superhelical locations.

Complementation cloning identifies the essentials of mammalian Mastl kinase activation

This study uses complementation cloning to identify that phosphorylation of S861 in Mastl kinase is dispensable for its function in mammalian cells.

Parp3 promotes long-range end-joining in murine cells

This study shows Parp3 promotes chromosomal rearrangements in murine cells, contrasting with Parp1's suppressive role in DNA double-strand break processing.