Author

G. Doing

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Assay:bulk RNA-seq· 4 Organism:bacteria (other)· 3 Research Focus:gene regulatory network inference· 3 Research Focus:batch correction / integration· 1 Organism:C. elegans· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

D. A. Hogan· 4 shared C. S. Greene· 2 shared S. L. Neff· 2 shared A. Collins· 1 shared A. J. Lee· 1 shared B. A. Stanton· 1 shared C. E. Harty· 1 shared C. Greene· 1 shared

Activity by Year

2017-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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4 shared papersMicrobiology

D. A. Hogan

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Author profile →

5 papers

Recent·Most cited

Analysis of Pseudomonas aeruginosa transcription in an ex vivo cystic fibrosis sputum model identifies metal restriction as a gene expression stimulus

S. L. Neff, G. Doing, T. E. Reiter, T. H. Hampton, C. S. Greene, D. A. Hogan

The paper analyzes Pseudomonas aeruginosa gene expression in CF sputum and identifies metal restriction as a key driver of gene expression variation across donors.

bioRxiv · Aug 21, 2023 · PreprintMicrobiology

Computationally efficient assembly of a Pseudomonas aeruginosa gene expression compendium

G. Doing, A. J. Lee, S. L. Neff, J. D. Holt, B. A. Stanton, C. S. Greene, D. A. Hogan

The paper processes and normalizes thousands of Pseudomonas aeruginosa RNA-seq datasets to enable cross-experiment comparisons and hypothesis testing.

bioRxiv · Jan 24, 2022 · PreprintMicrobiology

Conditional antagonism in co-cultures of Pseudomonas aeruginosa and Candida albicans: an intersection of ethanol and phosphate signaling distilled from dual-seq transcriptomics

G. Doing, K. Koeppen, P. Occhipinti, D. A. Hogan

This study identifies ethanol and phosphate signaling interactions between Pseudomonas aeruginosa and Candida albicans using dual RNA-seq, revealing conditional antagonism mediated by PhoB and Pho4.

PLOS Genetics · Aug 19, 2020Peer-reviewedMicrobiology

Ethanol stimulates trehalose production through a SpoT-DksA-AlgU dependent pathway in Pseudomonas aeruginosa

C. E. Harty, D. Martins, G. Doing, D. L. Mould, M. E. Clay, D. Nguyen, D. A. Hogan

This paper shows ethanol induces trehalose production in Pseudomonas aeruginosa via a SpoT-DksA-AlgU pathway and AHL quorum sensing, dependent on growth phase.

Journal of Bacteriology · Jun 15, 2019Peer-reviewedMicrobiology

A Multimodal Strategy Used By A Large c-di-GMP Network

K. Dahlstrom, A. Collins, G. Doing, J. Taroni, T. Gauvin, C. Greene, D. Hogan, G. O'Toole

The paper investigates a large c-di-GMP network in Pseudomonas fluorescens, showing it uses multimodal regulation to control biofilm formation across nutrient conditions.

bioRxiv · Oct 4, 2017Microbiology