Author

J. Faeder

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:software / tool· 2 Approach:deep learning· 1 Approach:experimental assay· 1 Approach:statistical model· 1

Frequent Co-Authors

A. Bogetti· 1 shared A. Husar· 1 shared A. S. Saglam· 1 shared A. Saglam· 1 shared D. LeBard· 1 shared D. M. Zuckerman· 1 shared D. Ray· 1 shared G. C. Garcia· 1 shared

Activity by Year

2022-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBiophysics

A. Bogetti

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2 papers

Recent·Most cited

A Suite of Advanced Tutorials for the WESTPA 2.0 Rare-Events Sampling Software

A. Bogetti, J. Leung, J. Russo, S. Zhang, J. Thompson, A. Saglam, D. Ray, R. Abraham, J. Faeder, I. Andricioaei, J. Adelman, M. Zwier, D. LeBard, D. M. Zuckerman, L. Chong

The paper provides advanced tutorials for WESTPA 2.0, demonstrating new features for rare-events sampling in molecular simulations.

bioRxiv · Oct 4, 2022 · PreprintBiophysics

MCell4 with BioNetGen: A Monte Carlo Simulator of Rule-Based Reaction-Diffusion Systems with Python Interface

A. Husar, M. Ordyan, G. C. Garcia, J. G. Yancey, A. S. Saglam, J. Faeder, T. M. Bartol, M. B. Kennedy, T. J. Sejnowski

The paper introduces MCell4, a new version of the MCell simulation program with Python interface and BioNetGen support for rule-based reaction-diffusion modeling.

bioRxiv · May 17, 2022Biophysics