Author

J. Russo

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 3 Animal Behavior & Cognition· 1 Biochemistry· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Research Focus:benchmarking· 2 Approach:deep learning· 2 Assay:ATAC-seq· 1 Assay:behavioral assay· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

A. Bogetti· 3 shared D. M. Zuckerman· 3 shared D. LeBard· 2 shared J. Adelman· 2 shared J. Leung· 2 shared J. Thompson· 2 shared L. Chong· 2 shared M. Zwier· 2 shared

Activity by Year

2021-2024 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersBiophysics

A. Bogetti

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Increased chromatin accessibility mediated by nuclear factor I drives transition to androgen receptor splice variant dependence in castration-resistant prostate cancer

L. Poluben, M. Nouri, J. Liang, A. Varkaris, B. Ersoy-Fazlioglu, O. Voznesensky, I. Lee, X. Qiu, L. Cato, J.-H. Seo, M. Freedman, A. Sowalsky, N. Lack, E. Corey, P. Nelson, , S. Balk

This study shows that ARv7 drives AR activity in castration-resistant prostate cancer through increased chromatin accessibility mediated by NFI factors.

bioRxiv · Jan 10, 2024 · PreprintCancer Biology

A Suite of Advanced Tutorials for the WESTPA 2.0 Rare-Events Sampling Software

A. Bogetti, J. Leung, J. Russo, S. Zhang, J. Thompson, A. Saglam, D. Ray, R. Abraham, J. Faeder, I. Andricioaei, J. Adelman, M. Zwier, D. LeBard, D. M. Zuckerman, L. Chong

The paper provides advanced tutorials for WESTPA 2.0, demonstrating new features for rare-events sampling in molecular simulations.

bioRxiv · Oct 4, 2022 · PreprintBiophysics

WESTPA 2.0: High-performance upgrades for weighted ensemble simulations and analysis of longer-timescale applications

J. Russo, S. Zhang, J. Leung, A. Bogetti, J. Thompson, A. DeGrave, P. Torrillo, A. J. Pratt, K. Wong, J. Xia, J. T. Copperman, J. Adelman, M. Zwier, D. LeBard, D. M. Zuckerman, L. Chong

The paper introduces WESTPA 2.0, an upgraded software package for weighted ensemble simulations, enhancing efficiency and analysis of longer-timescale applications.

bioRxiv · Dec 5, 2021Biophysics

#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol

A. Dommer, L. Casalino, F. Kearns, M. Rosenfeld, N. Wauer, S.-H. Ahn, J. Russo, S. Oliveira, C. Morris, A. Bogetti, A. Trifan, A. Brace, T. Sztain, A. Clyde, H. Ma, , Muholland

This paper uses AI-enabled multiscale computational microscopy to study SARS-CoV-2 Delta variant in respiratory aerosols, revealing atomic-level insights into airborne transmission.

bioRxiv · Nov 12, 2021Biophysics

Dominating Lengthscales of Zebrafish Collective Behaviour

Y. Yang, F. Turci, E. Kague, C. L. Hammond, J. Russo, C. P. Royall

This study quantifies two length scales in zebrafish collective behavior and links their ratio to the degree of polarized motion using a self-propelled particle model.

bioRxiv · Sep 1, 2021Animal Behavior & Cognition

Vascular KATP channel structural dynamics reveal regulatory mechanism by Mg-nucleotides

M. W. Sung, Z. Yang, B. L. Patton, B. Mostofian, J. Russo, D. M. Zuckerman, S.-L. Shyng

The paper determines cryoEM structures of vascular KATP channels bound to Mg-nucleotides and reveals a conformational pathway for activation.

bioRxiv · May 15, 2021Biochemistry