Author

J. Herrera

College of the Holy Cross

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Developmental Biology· 1 Evolutionary Biology· 1 Neuroscience· 1 Zoology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:mouse· 3 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:ecology & biodiversity· 1

Frequent Co-Authors

A. C. Lima· 1 shared A. M. Stendahl· 1 shared Andrew ShapiroiD· 1 shared B. Ndjamen· 1 shared Brian Macdonough· 1 shared Brian SavilleiD· 1 shared Briti Prajapati· 1 shared C. E. Layman· 1 shared

Activity by Year

2023-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperEvolutionary Biology

A. C. Lima

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Quiescence modulates age-related changes in the functional capacity of highly proliferative canine lung mesenchymal stromal cell populations

Nakesha Agyapong, Leslie Dominguez-Ortega, Brian Macdonough, Patrick Mulluso, Sagar M. Patel, Briti Prajapati, Brian Saville, Andrew Shapiro, Ethan Trim, Kara Battaglia, J. Herrera, Gianna Garifo-MacPartland, Dianne Newcombe, Latoya Okundaye, Heather Paglia, Julia A. Paxson

This study shows that age-related decline in canine lung mesenchymal stromal cell proliferation is linked to quiescence rather than senescence, with minimal transcriptomic changes.

PLoS ONE · Jul 23, 2025Peer-reviewedDevelopmental Biology

Effect of habitat degradation on hantavirus infection among introduced and endemic small mammals of Madagascar

J. A. Dubrulle, K. Kauffman, V. Soarimalala, T. Randriamoria, S. M. Goodman, J. Herrera, C. L. Nunn, P. Tortosa

The paper investigates how habitat degradation affects hantavirus infection in small mammals in Madagascar, finding higher prevalence in agricultural areas due to increased Rattus rattus abundance and smaller body size.

bioRxiv · Dec 24, 2023 · PreprintZoology

TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function

M. Okhovat, J. VanCampen, A. C. Lima, K. Nevonen, C. E. Layman, S. Ward, J. Herrera, A. M. Stendahl, R. Yang, L. Harshman, W. Li, R. R. Sheng, Y. Mao, L. Fedorov, B. Ndjamen, , L. Carbone

The paper analyzes TAD boundaries across species to show evolutionary conservation and functional significance, finding ultraconserved boundaries have stronger insulation and CTCF binding.

bioRxiv · Mar 7, 2023Evolutionary Biology

Circadian clock genes Bmal1 and Per2 in the nucleus accumbens are negative regulators of alcohol-drinking behavior in mice.

J. Herrera, Margo Button, P. Doherty-Haigh, C. Goldfarb, Nour Quteishat, Shimon Amir, Konrad Schoettner

This study shows that Bmal1 and Per2 in the nucleus accumbens reduce alcohol consumption in male mice, but not in females, with Bmal1's effect being specific to the nucleus accumbens in females.

bioRxiv · Feb 24, 2023 · PreprintNeuroscience