Author

M. Biocanin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Cell Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Organism:mouse· 3 Assay:scRNA-seq· 3 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:trajectory inference· 2 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

B. Deplancke· 3 shared J. Russeil· 3 shared V. Gardeux· 3 shared J. Pezoldt· 2 shared W. Chen· 2 shared W. Saelens· 2 shared A. Chrisnandy· 1 shared A. Gralak· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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3 shared papersCell Biology

B. Deplancke

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Author profile →

3 papers

Recent·Most cited

Cell BiologybioRxivJan 30, 2024

Dissecting reprogramming heterogeneity at single-cell resolution using scTF-seq

W. Liu, W. Saelens, P. Rainer…·B. Deplancke

The paper introduces scTF-seq, a method to study TF dose-dependent reprogramming in mouse MSCs, revealing heterogeneity in cell fate and TF sensitivity.

DOI 10.1038/s41588-025-02343-7

mousescRNA-seq

𝕏 PostBluesky

ImmunologybioRxivPreprintJun 6, 2021

Postnatal lymph node expansion of stromal progenitors towards reticular and CD34+ stromal cell subsets is determined by distinct transcriptional programs

J. Pezoldt, C. Wiechers, M. Litovchenko…·J. Huehn

The paper identifies distinct transcriptional programs driving the expansion of stromal progenitors in mesenteric lymph nodes, revealing Irf3's role in FRC differentiation and microbiota-independent epigenomic signatures.

DOI 10.1101/2021.06.06.447189

mousescRNA-seq

𝕏 PostBluesky

BioengineeringbioRxivPreprintMay 19, 2020

Deterministic scRNA-seq of individual intestinal organoids reveals new subtypes and coexisting distinct stem cell pools

J. Bues, M. Biocanin, J. Pezoldt…·B. Deplancke

The paper introduces DisCo, a deterministic scRNA-seq method for small tissue samples, revealing new intestinal organoid subtypes and stem cell populations.

DOI 10.1101/2020.05.19.103812

mousescRNA-seq

𝕏 PostBluesky