Author

M. Ebrahimi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biophysics· 3 Cell Biology· 2 Biochemistry· 1 Cancer Biology· 1 Physiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 6 Research Focus:cell type annotation· 4 Research Focus:differential expression· 4 Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:drug response / drug discovery· 2 Assay:imaging· 2 Approach:statistical model· 2

Frequent Co-Authors

P. M. Gilbert· 3 shared A. D. Hofemeier· 1 shared A. Datye· 1 shared A. Emami Razavi· 1 shared A. F. Pinto· 1 shared A. Jurado· 1 shared A. Nordstrom· 1 shared A. Taleb· 1 shared

Activity by Year

2018-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 9 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersCell Biology

P. M. Gilbert

Mutual co-authors in cluster

Author profile →

8 papers

Recent·Most cited

Computing absolute binding affinities by Streamlined Alchemical Free Energy Perturbation (SAFEP)

E. Santiago-McRae, M. Ebrahimi, J. W. Sandberg, G. Brannigan, J. Henin

The paper introduces SAFEP, a framework for computing free energy of binding using alchemical free energy perturbation in NAMD, with a practical example on phenol to lysozyme.

bioRxiv · Dec 9, 2022 · PreprintBiophysics

Associations of human femoral condyle cartilage structure and composition with viscoelastic and constituent-specific material properties at different stages of osteoarthritis

M. Ebrahimi, A. Turkiewicz, M. A. J. Finnila, S. Saarakkala, M. Englund, R. K. Korhonen, P. Tanska

This study examines how structural and compositional changes in human knee cartilage relate to mechanical properties across osteoarthritis stages.

bioRxiv · May 1, 2022Biophysics

The Expression Pattern of miR-17, -24, -124 and -145 as Diagnostic Factor for Metastatic Gastric Cancer; a Lesson from Gastric Cancer Stem cells

H. Yasavoli-Sharahi, S. Jahangiri-Tazehkand, Z. Iranmehr, C. Eslahchi, A. Emami Razavi, S. Moradi, N. Shayan Asl, F. Memari, M. Ebrahimi

This study identifies four miRNAs (miR-17, -24, -124, -145) as potential biomarkers for metastatic gastric cancer by analyzing their expression in cancer stem cells and patient tumors.

bioRxiv · Apr 8, 2021 · PreprintCancer Biology

Electrophysiological analysis of healthy and dystrophic 3D bioengineered skeletal muscle tissues

C. T. Nguyen, M. Ebrahimi, P. M. Gilbert, B. A. Stewart

This study analyzes electrophysiological properties of healthy and dystrophic 3D bioengineered skeletal muscle tissues, showing DMD features are replicated in the model and a block co-polymer improves membrane potential.

bioRxiv · Nov 10, 2020Cell Biology

Global and local tension measurements in biomimetic skeletal muscle tissues reveals early mechanical homeostasis

A. D. Hofemeier, T. Limon, T. M. Muenker, B. Wallmeyer, A. Jurado, M. E. Afshar, M. Ebrahimi, P. M. Gilbert, T. Betz

This study introduces a new chamber design for measuring both global and local tension in 3D muscle tissues, revealing early mechanical homeostasis during development.

bioRxiv · Jun 24, 2020Biophysics

Application of Different Types of Lactic Acid Bacteria Inoculant on Ensiled Rice Straw; Effects on Silage Quality, Rumen Fermentation, Methane Production and Microbial Population

M. Ebrahimi, E. Oskoueian, S. Jafari, R. Noura, M. F. Jahromi, G. Y. Meng

bioRxiv · Apr 17, 2019 · PreprintPhysiology

TGFβ signaling curbs cell fusion and muscle regeneration

F. Girardi, A. Taleb, L. Giordani, B. CADOT, A. Datye, M. Ebrahimi, D. G. Gamage, D. P. Millay, P. M. Gilbert, F. Le Grand

This study shows that TGFβ signaling inhibits muscle cell fusion and regeneration, with inhibition promoting fusion and muscle repair.

bioRxiv · Feb 21, 2019Cell Biology

14-3-3 proteins activate Pseudomonas exotoxins-S and -T by chaperoning a hydrophobic surface

T. Karlberg, P. Hornyak, A. F. Pinto, S. Milanova, M. Ebrahimi, M. Lindberg, N. Pullen, A. Nordstrom, E. Loverli, R. Caraballo, E. V. Wong, K. Nareoja, A.-G. Thorsell, M. Elofsson, E. M. De La Cruz, , H. Schuler

This study identifies a novel hydrophobic interface between 14-3-3 proteins and Pseudomonas exotoxins-S and -T, showing 14-3-3 activates these toxins by preventing aggregation, independent of their C-terminal phosphopeptide binding motifs.

bioRxiv · Jun 8, 2018Biochemistry