Author

P. Naik

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Bioengineering· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:cell type annotation· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Assay:DNA methylation· 1

Frequent Co-Authors

D. Spector· 2 shared A. Dobin· 1 shared A. Rishi· 1 shared C. Fan· 1 shared C. M. Perou· 1 shared D. L. Spector· 1 shared D. Paul· 1 shared D. Plenker· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersCell Biology

D. Spector

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4 papers

Recent·Most cited

A sub-set of guanine- and cytosine-rich genes are actively transcribed at the nuclear Lamin B1 region

G. I. Balasooriya, P. Naik, T. L. Wee, D. Spector

The paper identifies a subset of actively transcribed genes associated with Lamin B1 at the nuclear envelope in mESCs, showing enrichment of guanine and cytosine in their gene bodies and promoters.

bioRxiv · Oct 28, 2023Cell Biology

Identification of glioblastoma stem cell-associated lncRNAs using single-cell RNA-sequencing datasets

R. Hazra, R. Utama, P. Naik, A. Dobin, D. Spector

This study identifies GSC-associated lncRNAs using single-cell RNA-sequencing data from GBM tumors and organoids, revealing distinct lncRNA expression patterns in different GSC populations.

bioRxiv · Jan 20, 2023Cancer Biology

Patient-derived triple negative breast cancer organoids provide robust model systems that recapitulate tumor intrinsic characteristics

S. Bhatia, M. Kramer, S. Russo, P. Naik, G. Arun, K. Brophy, P. A. Andrews, C. Fan, C. M. Perou, J. Preall, T. Ha, D. Plenker, D. Tuveson, A. Rishi, J. E. Wilkinson, , D. L. Spector

This study develops and characterizes patient-derived TNBC organoids that recapitulate tumor properties and identify key signaling pathways involved in cancer progression.

bioRxiv · Aug 9, 2021Cancer Biology

An integrated one-step assay combining thermal lysis and loop-mediated isothermal DNA amplification (LAMP) in 30 min from E. coli and M. smegmatis cells on a paper substrate

P. Naik, S. Jaitpal, P. Shetty, D. Paul

bioRxiv · Mar 31, 2019Bioengineering