Author

P. Permi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biochemistry· 2 Microbiology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Research Focus:cell signaling & trafficking· 1 Research Focus:chromatin & epigenetic regulation· 1 Organism:human· 1 Organism:mouse· 1 Assay:protein structure· 1

Frequent Co-Authors

H. Tossavainen· 3 shared L. Antenucci· 2 shared M. Hellman· 2 shared A. R. Fernie· 1 shared A. Shapiguzov· 1 shared A. Tiwari· 1 shared B. De Rybel· 1 shared B. Wybouw· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBiochemistry

H. Tossavainen

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Reassessing the substrate specificities of the major Staphylococcus aureus peptidoglycan hydrolases lysostaphin and LytM

L. Antenucci, S. Virtanen, C. Thapa, M. Jartti, I. Pitkänen, H. Tossavainen, P. Permi

This study uses NMR spectroscopy to determine the substrate specificities of lysostaphin and LytM, showing they prefer D-Ala-Gly cross-linked parts of peptidoglycan, with LytM also acting as a D-alanyl-glycine endopeptidase.

bioRxiv · Oct 13, 2023Biochemistry

Evolutionary plasticity of SH3 domain binding by Nef proteins of the HIV 1/SIVcpz lentiviral lineage

Z. Zhao, R. Fagerlund, D. Sauter, H. Tossavainen, P. Permi, F. Kirchhoff, K. Saksela

This paper shows that Nef proteins from HIV and SIV use different structural strategies, called R-clamps, to bind SH3 domains, with variations in amino acids at positions 83 and 120.

bioRxiv · Jun 22, 2021Microbiology

Integrin cytoplasmic domain and pITAM compete for spleen tyrosine kinase binding

L. Antenucci, M. Hellman, V. P. Hytonen, P. Permi, J. Ylanne

The paper identifies distinct binding sites of integrin and pITAM to Syk's SH2 domains and shows they compete for binding.

bioRxiv · Jan 18, 2019 · PreprintBiochemistry

RCD1 Coordinates Chloroplastic and Mitochondrial Electron Transfer through Interaction with ANAC Transcription Factors

A. Shapiguzov, J. P. Vainonen, K. Hunter, H. Tossavainen, A. Tiwari, S. Järvi, M. Hellman, B. Wybouw, F. Aarabi, S. Alseekh, N. Sipari, L. Nikkanen, K. Van Der Kelen, J. Krasensky-Wrzaczek, J. Salojärvi, , J. Kangasjärvi

The paper shows RCD1 interacts with ANAC transcription factors to regulate chloroplastic and mitochondrial retrograde signaling via ROS-dependent mechanisms.

bioRxiv · Jun 13, 2018 · PreprintPlant Biology