Author

R. M. Ziels

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

P. Sampara· 2 shared A. Clum· 1 shared A. Tomatsu· 1 shared D. Vyshenska· 1 shared D. Z. Sousa· 1 shared E. A. Eloe-Fadrosh· 1 shared E. Nuccio· 1 shared J. Pett-Ridge· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersMicrobiology

P. Sampara

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Author profile →

3 papers

Recent·Most cited

MicrobiologybioRxivDec 20, 2022

A standardized quantitative analysis strategy for stable isotope probing metagenomics

D. Vyshenska, P. Sampara, K. Singh…·R. R. Malmstrom

This paper introduces a standardized analysis framework and R package for quantifying isotopic enrichment in SIP metagenomics to identify active microbial genomes.

DOI 10.1128/msystems.01280-22

metagenomicsstatistical model

𝕏 PostBluesky

MicrobiologybioRxivApr 24, 2021

Activity-based cell sorting reveals resistance of functionally degenerate Nitrospira during a press disturbance in nitrifying activated sludge

M. Madill, Y. Luo, P. Sampara, R. M. Ziels

The paper uses BONCAT-FACS to analyze translational activity of Nitrospira populations in activated sludge during a press disturbance, revealing functional degeneracy and resistance among different ASVs.

DOI 10.1128/msystems.00712-21

proteomicsexperimental assay

𝕏 PostBluesky

MicrobiologybioRxivFeb 28, 2019

Elucidating syntrophic butyrate-degrading populations in anaerobic digesters using stable isotope-informed genome-resolved metagenomics

R. M. Ziels, M. K. Nobu, D. Z. Sousa

This study identifies two novel microbial genomes involved in syntrophic butyrate degradation in anaerobic digesters using stable isotope-informed genome-resolved metagenomics.

DOI 10.1128/msystems.00159-19

metagenomicsgenetic perturbation / CRISPR

𝕏 PostBluesky