Author

S. Abrahamsson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Cell Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1 Assay:metagenomics· 1

Frequent Co-Authors

K.-W. Tang· 3 shared Y. Tian· 3 shared D. Vracar· 2 shared A. Bäckerholm· 1 shared A. Berner· 1 shared A. Green· 1 shared C. Guibentif· 1 shared E. Chorell· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersMicrobiology

K.-W. Tang

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Enhanced mitochondrial G-quadruplex formation impedes replication fork progression leading to mtDNA loss in human cells

M. Doimo, S. Abrahamsson, V. L'Hote, M. Ndi, R. N. Das, K. Aasumets, A. Berner, S. Goffart, J. L. O. Pohjoismäki, M. Davila, E. Chorell, S. Wanrooij

The paper shows that mitochondrial DNA replication stalling increases G-quadruplex formation, which blocks replication forks and leads to mtDNA loss in human cells.

bioRxiv · Jun 8, 2022Cell Biology

Detection of latent Epstein-Barr virus gene expression in single-cell sequencing of peripheral blood mononuclear cells

A. Bäckerholm, Y. Tian, I. Holmqvist, G. Xie, D. Vracar, S. Abrahamsson, C. Guibentif, K.-W. Tang

The paper detects latent EBV gene expression in single-cell RNA sequencing of peripheral blood mononuclear cells and identifies EBV-associated gene upregulation in infected B-lymphocytes.

bioRxiv · May 24, 2022 · PreprintMicrobiology

A three-dimensional Air-Liquid Interface Culture Model for the Study of Epstein-Barr virus Infection in the Nasopharynx

P. Ziegler, Y. Bai, Y. Tian, S. Abrahamsson, A. Green, J. Moore, S. E. Lee, M. M. Myerburg, H. J. Park, K.-W. Tang, K. H. Y. Shair

This study uses a 3D air-liquid interface culture model to show that nasopharyngeal epithelial cells can be infected by EBV, with single-cell RNA-sequencing identifying distinct EBV transcription profiles.

bioRxiv · Aug 31, 2020Microbiology

Optimization of cerebrospinal fluid microbial metagenomic sequencing diagnostics

J. Olausson, S. Brunet, D. Vracar, Y. Tian, S. Abrahamsson, S. H. Meghadri, P. Sikora, M. Lind Karlberg, H. Engstrom Jakobsson, K.-W. Tang

This study optimizes metagenomic sequencing for diagnosing central nervous system infections by establishing detection thresholds and reducing false positives through computational filters and controls.

bioRxiv · Jun 25, 2020 · PreprintMicrobiology