Author

S. Hoosdally

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Research Focus:variant calling· 3 Assay:long-read sequencing· 2 Assay:whole-genome sequencing· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

D. W. Crook· 3 shared N. D. Sanderson· 3 shared D. W. Eyre· 2 shared G. Rodger· 2 shared J. Kavanagh· 2 shared L. Barker· 2 shared S. George· 2 shared T. L. Street· 2 shared

Activity by Year

2020-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersMicrobiology

D. W. Crook

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Genomic Sequencing from Sputum for Tuberculosis Disease Diagnosis, Lineage Determination and Drug Susceptibility Prediction

K. Nilgiriwala, M.-S. Rabodoarivelo, M. B. Hall, G. Patel, A. Mandal, S. Mishra, F. R. Andrianomanana, K. Dingle, G. Rodger, S. George, D. W. Crook, S. Hoosdally, N. Mistry, N. Rakotosamimanana, Z. Iqbal, , T. M. Walker

This study evaluates direct-from-sputum whole-genome sequencing for tuberculosis diagnosis, lineage determination, and drug susceptibility prediction using different sequencing technologies.

bioRxiv · Oct 31, 2022Microbiology

DNA Thermo-Protection Facilitates Whole Genome Sequencing of Mycobacteria Direct from Clinical Samples by the Nanopore Platform

S. George, Y. Xu, G. Rodger, M. Morgan, N. D. Sanderson, S. Hoosdally, S. Thulborn, E. Robinson, P. Rathod, A. S. Walker, T. E. Peto, D. W. Crook, K. E. Dingle

This paper develops a thermo-protection buffer to enable direct whole genome sequencing of Mycobacteria from clinical samples using Nanopore technology, achieving high coverage at low bacterial concentrations.

bioRxiv · Apr 5, 2020 · PreprintMicrobiology

Optimizing DNA extraction methods for Nanopore sequencing of Neisseria gonorrhoeae direct from urine samples

T. L. Street, L. Barker, N. D. Sanderson, J. Kavanagh, S. Hoosdally, K. Cole, R. Newnham, M. Selvaratnam, M. Andersson, M. Llewelyn, J. O'Grady, D. W. Crook, D. W. Eyre

This study optimizes DNA extraction methods for Nanopore sequencing of Neisseria gonorrhoeae directly from urine samples to enable culture-free whole-genome reconstruction.

Journal of Clinical Microbiology · Feb 24, 2020Peer-reviewedMicrobiology

High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing

N. D. Sanderson, J. Swann, L. Barker, J. Kavanagh, S. Hoosdally, D. Crook, the GonFast Investigators Group, T. L. Street, D. W. Eyre

This study develops a workflow for high-precision variant and antimicrobial resistance calling from metagenomic Nanopore sequencing of Neisseria gonorrhoeae.

bioRxiv · Feb 7, 2020Microbiology