Author

T. J. Johnson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Ecology· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Assay:metagenomics· 5 Research Focus:ecology & biodiversity· 3 Research Focus:host-pathogen & immune response· 3 Organism:human· 2 Organism:mouse· 2 Organism:multiple species· 2 Approach:statistical model· 2

Frequent Co-Authors

A. Ghorbani· 2 shared B. Weber· 2 shared M. KC· 2 shared A. de Lauzanne· 1 shared A. J. Pickering· 1 shared A. Johnson· 1 shared A. Kearney· 1 shared A. Kinsley· 1 shared

Activity by Year

2017-2021 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 11 mutual co-author links

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2 shared papersMicrobiology

A. Ghorbani

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Leakiness at the human-animal interface in Southeast Asia and implications for the spread of antibiotic resistance

M. L. Nadimpalli, M. Stegger, R. Viau, V. Yith, A. de Lauzanne, N. Sem, L. Borand, B.-t. Huynh, S. Brisse, V. Passet, S. Overballe-Petersen, M. Aziz, M. Gouali, J. Jacobs, T. Phe, , L. B. Price

The paper identifies antibiotic resistance elements shared between humans and animals in Cambodia, highlighting the need to address human-animal interface leaks to combat antimicrobial resistance.

bioRxiv · Mar 15, 2021Ecology

Assessment of two DNA extraction kits for profiling poultry respiratory microbiota from multiple sample types

M. E. C. Abundo, J. Ngunjiri, K. J. M. Taylor, H. Ji, A. Ghorbani, M. KC, B. P. Weber, T. J. Johnson, L. Chang-Won

The paper compares two DNA extraction kits for poultry respiratory microbiota profiling, finding they yield similar microbial community results despite differences in DNA concentration and 16S rRNA gene copy numbers.

bioRxiv · Oct 21, 2020Microbiology

Respiratory and gut microbiota in commercial turkey flocks with disparate weight gain trajectories display differential compositional dynamics

K. J. Taylor, J. M. Ngunjiri, M. Abundo, H. Jang, M. Elaish, A. Ghorbani, M. KC, B. Weber, T. J. Johnson, C. W. Lee

This study compares respiratory and gut microbiota in two turkey flocks with different weight gain trajectories, finding that microbial composition changes over time and correlates with weight gain differences.

bioRxiv · Feb 19, 2020Microbiology

Emergence of a novel Salmonella enterica serotype Reading clone is linked to its expansion in commercial turkey production, resulting in unanticipated human illness in North America

E. A. Miller, E. Elnekave, C. Flores-Figueroa, A. Johnson, A. Kearney, J. Munoz-Aguayo, K. A. Tagg, L. Tschetter, B. Weber, C. Nadon, D. Boxrud, R. S. Singer, J. P. Folster, T. J. Johnson

This study identifies a novel Salmonella enterica serotype Reading clone linked to human outbreaks and commercial turkey production in North America through genomic analysis.

bioRxiv · Nov 26, 2019Microbiology

Diverse commensal E. coli clones and plasmids disseminate antimicrobial resistance genes in domestic animals and children in a semi-rural community in Ecuador

L. Salinas, P. A. Cardenas, T. J. Johnson, K. Vasco, J. Graham, G. Trueba

This study identifies diverse plasmids and nonclonal dissemination of antimicrobial resistance genes among E. coli isolates from humans and domestic animals in a semi-rural Ecuadorian community.

bioRxiv · Mar 20, 2019Microbiology

Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition

N. M. Fountain-Jones, N. Clark, A. Kinsley, M. Carstensen, J. Forrester, T. J. Johnson, E. Miller, S. Moore, T. Wolf, M. Craft

The paper investigates how microbial associations and spatial proximity influence gut microbial community composition in North American moose.

bioRxiv · Jan 9, 2019Ecology

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model

J. B. Clayton, G. A. Al-Ghalith, H. T. Long, B. V. Tuan, F. Cabana, H. Huang, P. Vangay, T. Ward, V. V. Minh, N. A. Tam, N. T. Dat, D. A. Travis, M. P. Murtaugh, H. Covert, K. E. Glander, , T. J. Johnson

The paper examines how diet and lifestyle affect the gut microbiome and health in red-shanked doucs, identifying microbial biomarkers of dysbiosis.

bioRxiv · Aug 17, 2017Microbiology