Author

V. Velasco-Berrelleza

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biophysics· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:chromatin & epigenetic regulation· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Organism:E. coli· 1

Frequent Co-Authors

A. Noy· 3 shared M. C. Leake· 2 shared A. D. Bates· 1 shared A. L. B. Pyne· 1 shared A. Maxwell· 1 shared B. W. Hoogenboom· 1 shared C. E. M. Stevenson· 1 shared F. M. Cugliandolo· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBiophysics

A. Noy

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BiophysicsbioRxivJan 7, 2021

Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides

A. L. B. Pyne, A. Noy, K. Main…·S. A. Harris

This study uses AFM and MD simulations to analyze how DNA supercoiling affects structure and triplex-forming oligonucleotide binding at base-pair resolution.

DOI 10.1038/s41467-021-21243-y

DNA methylationHi-C

𝕏 PostBluesky

BiophysicsbioRxivPreprintApr 17, 2020

Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity

S. Yoshua, G. Watson, J. Howard…·A. Noy

The paper shows IHF binds DNA in three distinct modes with varying specificity, enabling DNA compaction and structural organization.

DOI 10.1101/2020.04.17.047076

E. colistructural biology

𝕏 PostBluesky

BiophysicsPhysical Chemistry Chemical PhysicsPeer-reviewedJan 1, 2020

SerraNA: a program to determine nucleic acids elasticity from simulation data

V. Velasco-Berrelleza, M. Burman, J. W. Shepherd…·A. Noy

SerraNA calculates elastic parameters of nucleic acids from simulation data, revealing sequence-dependent elasticity and global bendability from local bending angles.

DOI 10.1039/d0cp02713h

deep learningstatistical model

𝕏 PostBluesky