Author

Y. Uchida

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biophysics· 1 Cell Biology· 1 Ecology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Research Focus:development & morphogenesis· 2 Research Focus:ecology & biodiversity· 2 Assay:imaging· 2 Approach:deep learning· 1 Assay:field survey / ecological data· 1

Frequent Co-Authors

A. Bakulin· 1 shared A. Kimura· 1 shared A. Makino· 1 shared A. Zinkevich· 1 shared C. Choe· 1 shared C. Henkel· 1 shared D. B. T. Cox· 1 shared D. Jang· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBiophysics

A. Bakulin

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Ribonanza: deep learning of RNA structure through dual crowdsourcing

S. He, R. Huang, J. Townley, R. C. Kretsch, T. G. Karagianes, D. B. T. Cox, H. Blair, D. Penzar, V. Vyaltsev, E. Aristova, A. Zinkevich, A. Bakulin, H. Sohn, D. Krstevski, T. Fukui, , R. Das

The paper introduces RibonanzaNet, a deep learning model trained on crowdsourced RNA chemical mapping data to predict RNA structure and related properties.

bioRxiv · Feb 24, 2024 · PreprintBiophysics

A non-toxic equinatoxin-II reveals the dynamics of sphingomyelin in the cytosolic leaflet of the plasma membrane

T. Mori, T. Niki, Y. Uchida, K. Mukai, Y. Kuchitsu, T. Kishimoto, A. Makino, T. Kobayashi, H. Arai, Y. Yokoata, T. Taguchi, K. G. N. Suzuki

The paper uses a non-toxic SM probe to show dynamic SM and cholesterol domains in the cytosolic leaflet of plasma membranes.

bioRxiv · Nov 10, 2023 · PreprintCell Biology

Long-term recoveries of forest ecosystem components after shallow landslides were asynchronized among slope positions

W. Hotta, J. Morimoto, S. Yanai, Y. Uchida, F. Nakamura

This study shows that forest recovery after shallow landslides occurs faster at lower slope positions due to richer disturbance legacies and stabilized soils.

bioRxiv · Nov 7, 2022 · PreprintEcology

Evaluation of microbial diversification mechanisms in legume-based mixed cropping systems with different legume species and types of fertilizer management

A. Kimura, Y. Uchida

This study evaluates how different legume species and fertilizer types affect soil microbial diversity in mixed cropping systems using 16S rRNA analysis.

bioRxiv · Dec 9, 2020 · PreprintMicrobiology