Author

Kata Krizic

University of CopenhagenORCID 0000-0002-4065-4952Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Assay:scRNA-seq· 3 Organism:human· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:clustering· 1

Frequent Co-Authors

Kim Bak JenseniD· 2 shared Martti MaimetsiD· 2 shared Raul Bardini BressaniD· 2 shared Stine Lind HanseniD· 2 shared Astrid M. Baattrup· 1 shared Benedicte Schultz KapeliD· 1 shared Cecilia LövkvistiD· 1 shared Grzegorz Jerzy MaciagiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersCell Biology

Kim Bak JensenORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 20, 2026

multiomeR: a pipeline for reproducible analysis of large-scale single-nucleus Epi Multiome datasets

Thomas Gade Koefoed, Shanshan He, Malte Thodberg…·Torben F. Hansen

multiomeR provides a reproducible R pipeline for analyzing large-scale single-nucleus Epi Multiome datasets, improving efficiency and reducing memory usage compared to existing workflows.

DOI 10.64898/2026.10.14.759117

humanscRNA-seq

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Cell BiologyDevelopmental CellPeer-reviewedJan 9, 2025

Design principles of small intestinal crypt maintenance

Isidora Banjac, Martti Maimets, Ingrid Ho Ching Tsang…·Kim Bak Jensen

The paper develops a spatially and temporally resolved model of small intestinal crypt maintenance using integrated approaches, revealing CBC cells as the main driver of tissue replenishment.

13 citationstop 2%

mousescRNA-seq

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Cell BiologyStem Cell ReportsPeer-reviewedJul 18, 2024

JAK/STAT signaling promotes the emergence of unique cell states in ulcerative colitis

Grzegorz Jerzy Maciag, Stine Lind Hansen, Kata Krizic…·Kim Bak Jensen

This study uses scRNA-seq to show JAK/STAT signaling creates unique regenerative cell states in ulcerative colitis, altering normal tissue replenishment patterns.

34 citationstop 2%

humanscRNA-seq

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