Author

Stine Lind Hansen

University of CopenhagenORCID 0000-0002-5967-286XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 2 Developmental Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Assay:scRNA-seq· 3 Approach:statistical model· 3 Assay:ATAC-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Organism:mouse· 2

Frequent Co-Authors

Kim Bak JenseniD· 3 shared Martti MaimetsiD· 3 shared Raul Bardini BressaniD· 3 shared Grzegorz Jerzy MaciagiD· 2 shared Kata KriziciD· 2 shared Albin SandeliniD· 1 shared Álvaro Bustos GutiérreziD· 1 shared Astrid M. Baattrup· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersCell Biology

Kim Bak JensenORCID

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4 papers

Recent·Most cited

Developmental BiologybioRxivPreprintSep 3, 2026

Clonal memory in human embryonic stem cells biases fate potential during endoderm differentiation

Madeleine Linneberg-Agerholm, Álvaro Bustos Gutiérrez, Stine Lind Hansen…·Atefeh Lafzi

This study shows that clonal memory in human embryonic stem cells influences fate potential during endoderm differentiation by heritable chromatin states.

DOI 10.64898/2026.09.02.748863

humanscRNA-seq

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Cell BiologyDevelopmental CellPeer-reviewedJan 9, 2025

Design principles of small intestinal crypt maintenance

Isidora Banjac, Martti Maimets, Ingrid Ho Ching Tsang…·Kim Bak Jensen

The paper develops a spatially and temporally resolved model of small intestinal crypt maintenance using integrated approaches, revealing CBC cells as the main driver of tissue replenishment.

13 citationstop 2%

mousescRNA-seq

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Cell BiologyStem Cell ReportsPeer-reviewedJul 18, 2024

JAK/STAT signaling promotes the emergence of unique cell states in ulcerative colitis

Grzegorz Jerzy Maciag, Stine Lind Hansen, Kata Krizic…·Kim Bak Jensen

This study uses scRNA-seq to show JAK/STAT signaling creates unique regenerative cell states in ulcerative colitis, altering normal tissue replenishment patterns.

34 citationstop 2%

humanscRNA-seq

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Developmental BiologyScience AdvancesPeer-reviewedJul 12, 2023

Transcriptional and epigenomic profiling identifies YAP signaling as a key regulator of intestinal epithelium maturation

Laura Maarit Pikkupeura, Raul Bardini Bressan, Jordi Guiu…·Kim Bak Jensen

43 citationstop 2%

mousebulk RNA-seq

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