Haidong Yan

This study identifies PgCCCH50 as a drought and salt tolerance gene in pearl millet, showing it is regulated by the ABA-responsive transcription factor PgAREB1.

The paper constructs a single-cell chromatin accessibility atlas in rice and compares it across grass species to study the evolution of cell-type-specific cis-regulatory elements.

The paper identifies cell-type-specific cis-regulatory variants in maize using single-cell genomics and population genetics, revealing their role in local adaptation and flowering.

The paper constructs a spatially resolved multiomic single-cell atlas of soybean development, identifying cell types, chromatin regions, and gene regulatory networks involved in growth and nitrogen fixation.

This study uses single-cell ATAC-seq to analyze cis-regulatory elements in C4 photosynthesis across grass species, revealing cell-type-specific chromatin accessibility patterns and evolutionary dynamics.

This study presents a haplotype-resolved genome of upland switchgrass and identifies genetic factors associated with cold tolerance through multi-omics analysis.

The paper shows that epigenetic mechanisms, including base J modification, regulate mono-allelic transcriptional silencing of adjacent polycistronic gene clusters in Trypanosoma brucei.

The paper introduces scifi-ATAC-seq, a method that increases single-cell ATAC-seq throughput by 20-fold using combinatorial fluidic indexing.

This study shows that PP1-1 modulates Pol II termination in T. brucei by dephosphorylating the Pol II large subunit, leading to readthrough transcription and pervasive genome transcription.

The paper introduces SPmarker, an interpretable machine learning pipeline to identify new cell-type marker genes in Arabidopsis root single-cell RNA-seq data, finding hundreds of novel markers and expanding trichoblast markers across species.

DeepTE classifies transposable elements using convolutional neural networks, outperforming existing tools in benchmark tests.