Zsolt Csabai

The paper reanalyzes sequencing data to reconstruct full-length monkeypox virus transcripts and shows temporal changes in gene regulation and transcript structure.

The paper examines how the canine fecal metabolome shifts during dietary changes and recovers when the diet is reverted, finding rapid and largely reversible changes with individual variation.

The paper profiles gut microbiota changes in astronauts during short-duration spaceflight and finds individualized, temporally localized shifts rather than uniform restructuring.

This study tracks the maturation of the canine gut microbiome through early life, showing it follows an age-diet trajectory but remains constrained by host-specific factors.

This study compares gut metagenomic profiling strategies across multiple stages and introduces an optimized pipeline and software tool for reliable and comparable results.

This study uses CAGE and long-read RNA sequencing to analyze the transcriptional architecture of human monkeypox virus, identifying alternative TSSs, TESs, promoter elements, and novel genes.

The paper uses long-read sequencing to identify novel Ori-proximal transcripts in herpesviruses, revealing regulatory complexity in DNA replication and transcription.

This study uses high-temporal-resolution nanopore sequencing to analyze SARS-CoV-2 and host cell transcriptomes at high coverage with a high virus titer.

This study uses long-read sequencing to analyze the human cytomegalovirus transcriptome, identifying novel transcript variants and complex transcriptional overlaps.

This study combines short and long-read sequencing to reveal a complex transcriptomic architecture of African swine fever virus, identifying novel genes, transcripts, and polycistronic RNA structures.

This study uses long-read sequencing to analyze the complex transcriptome of vaccinia virus and its impact on host gene expression, revealing extensive transcript isoforms and gene interactions.

This study profiles the dynamic lytic transcriptome of BoHV-1 using long-read sequencing and assesses its impact on the host cell transcriptome, revealing complex transcriptional overlaps and upregulated antiviral and viral genes.

The paper compares short-read and long-read sequencing methods to analyze the dynamic transcriptome of African swine fever virus and its host.

This study uses long-read sequencing to characterize the HSV-1 lytic transcriptome, identifying over 160 new transcripts and revealing complex transcriptional overlaps and novel features.

The paper uses long-read sequencing to analyze the VZV transcriptome, identifying novel transcripts, spliced variants, and a new class of non-coding RNAs, revealing a complex transcriptomic structure.