István Prazsák

The paper reanalyzes sequencing data to reconstruct full-length monkeypox virus transcripts and shows temporal changes in gene regulation and transcript structure.

The paper profiles gut microbiota changes in astronauts during short-duration spaceflight and finds individualized, temporally localized shifts rather than uniform restructuring.

This study evaluates how DNA extraction, primer selection, and sequencing platforms affect canine gut microbiome profiling by generating a large, standardized dataset for benchmarking bioinformatics pipelines.

This study compares gut metagenomic profiling strategies across multiple stages and introduces an optimized pipeline and software tool for reliable and comparable results.

This study uses CAGE and long-read RNA sequencing to analyze the transcriptional architecture of human monkeypox virus, identifying alternative TSSs, TESs, promoter elements, and novel genes.

This study enhances the annotation of the KSHV transcriptome using long-read and short-read sequencing, identifying novel transcripts and improving existing annotations.

The paper uses long-read sequencing to identify novel Ori-proximal transcripts in herpesviruses, revealing regulatory complexity in DNA replication and transcription.

This study uses high-temporal-resolution nanopore sequencing to analyze SARS-CoV-2 and host cell transcriptomes at high coverage with a high virus titer.

This study uses long-read sequencing to analyze the complex transcriptome of vaccinia virus and its impact on host gene expression, revealing extensive transcript isoforms and gene interactions.

The paper compares short-read and long-read sequencing methods to analyze the dynamic transcriptome of African swine fever virus and its host.

The paper uses long-read sequencing to analyze the VZV transcriptome, identifying novel transcripts, spliced variants, and a new class of non-coding RNAs, revealing a complex transcriptomic structure.