Balázs Kakuk

The paper reanalyzes sequencing data to reconstruct full-length monkeypox virus transcripts and shows temporal changes in gene regulation and transcript structure.

This study compares full-length ONT 16S and shotgun metagenomics in canine fecal samples, finding high functional concordance but lower taxonomic agreement, with host-specific references improving taxonomic consistency.

The paper presents DogMAG, a canine gut metagenome resource with assembled bacterial genomes and viral candidates using long-read and hybrid sequencing.

The paper profiles gut microbiota changes in astronauts during short-duration spaceflight and finds individualized, temporally localized shifts rather than uniform restructuring.

This study tracks the maturation of the canine gut microbiome through early life, showing it follows an age-diet trajectory but remains constrained by host-specific factors.

This study evaluates how DNA extraction, primer selection, and sequencing platforms affect canine gut microbiome profiling by generating a large, standardized dataset for benchmarking bioinformatics pipelines.

This study compares gut metagenomic profiling strategies across multiple stages and introduces an optimized pipeline and software tool for reliable and comparable results.

This study uses CAGE and long-read RNA sequencing to analyze the transcriptional architecture of human monkeypox virus, identifying alternative TSSs, TESs, promoter elements, and novel genes.

This study enhances the annotation of the KSHV transcriptome using long-read and short-read sequencing, identifying novel transcripts and improving existing annotations.

The paper uses long-read sequencing to identify novel Ori-proximal transcripts in herpesviruses, revealing regulatory complexity in DNA replication and transcription.

This study uses high-temporal-resolution nanopore sequencing to analyze SARS-CoV-2 and host cell transcriptomes at high coverage with a high virus titer.

This study uses long-read sequencing to analyze the human cytomegalovirus transcriptome, identifying novel transcript variants and complex transcriptional overlaps.