Gábor Torma

LoRTIA Plus improves transcriptome annotation from long-read RNA-seq data by achieving high F1 scores for TSSs, TESs, and transcripts across multiple chemistries and organisms.

This paper uses long-read RNA sequencing to create a comprehensive transcriptomic atlas of Caviid Gammaherpesvirus 1, revealing its transcriptome and regulatory mechanisms.

This study enhances the annotation of the KSHV transcriptome using long-read and short-read sequencing, identifying novel transcripts and improving existing annotations.

The paper uses long-read sequencing to identify novel Ori-proximal transcripts in herpesviruses, revealing regulatory complexity in DNA replication and transcription.

This study uses long-read sequencing to analyze the human cytomegalovirus transcriptome, identifying novel transcript variants and complex transcriptional overlaps.

This study combines short and long-read sequencing to reveal a complex transcriptomic architecture of African swine fever virus, identifying novel genes, transcripts, and polycistronic RNA structures.

This study profiles the dynamic lytic transcriptome of BoHV-1 using long-read sequencing and assesses its impact on the host cell transcriptome, revealing complex transcriptional overlaps and upregulated antiviral and viral genes.

The paper compares short-read and long-read sequencing methods to analyze the dynamic transcriptome of African swine fever virus and its host.

The paper reanalyzes an HSV-1 transcriptome dataset using multiplatform and meta-analytic approaches to highlight the necessity of such methods for reliable transcriptome profiling.