SixPack-AbScan: a web server to discover cross-reactivity of antibodies across species
SixPack-AbScan is a web server that computationally screens antibodies for cross-reactivity across species using epitope conservation.
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Stockholm UniversityORCID 0000-0003-2155-0645Unclaimed ORCID profile · follow to get notified of new preprints
13 papers
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SixPack-AbScan is a web server that computationally screens antibodies for cross-reactivity across species using epitope conservation.
Ana Pinto-Teixeira, André Oliveira, Gonçalo Gouveia…·Carlos Conde
This study shows that elevated MPS1 causes chromosomal instability in colon cancer by converting the fibrous corona into a source of merotelic kinetochore-microtubule attachments.
Agustín Robles-Remacho, Yimin Zou, A. Jensen…·Mats Nilsson
The paper introduces miR-Space, a method for spatial miRNA profiling at single-cell resolution, revealing new miRNA distributions and cell-type associations in brain tissues.
Mirca Saras Saurty-Seerunghen, Hower Lee, Martha Holdar…·Marco Grillo
This paper introduces a method for targeted sequencing of expressed mutations in single cells using RNA-templated gap filling with BstFL polymerase, enabling simultaneous transcriptomic and mutation profiling.
Rodrigo Senovilla-Ganzo, Christina Bekiari, Eneritz Rueda-Alaña…·Fernando García‐Moreno
This paper integrates five vertebrate single-cell multi-omic atlases to reveal a conserved cellular blueprint and dual evolutionary constraints underlying early brain conservation across vertebrates.
Ruben R. G. Soares, Daniela A. García‐Soriano, Jimmy Larsson…·Johan Elf
The paper develops a method for in situ genotyping of bacterial libraries using chromosomally expressed barcodes to measure intracellular maturation times of red fluorescent proteins.
Sergio Marco Salas, Louis Benedikt Kuemmerle, Christoffer Mattsson Langseth…·Mats F. Nilsson
This study evaluates the Xenium In Situ spatial transcriptomics platform using mouse brain and human breast cancer datasets, comparing it to other technologies and benchmarking analysis tools.
Eneritz Rueda-Alaña, Rodrigo Senovilla-Ganzo, Marco Grillo…·Fernando García‐Moreno
This study compares the development and evolution of sensory circuits in the pallium of birds, lizards, and mammals, revealing divergent developmental trajectories but functional similarity in sensory processing.
Hower Lee, Christoffer Mattsson Langseth, Sergio Marco Salas…·Mats F. Nilsson
The paper introduces an open-source method for high-throughput in-situ transcriptomics and provides a computational workflow for data analysis.
Eneritz Rueda-Alaña, Marco Grillo, Enrique Vázquez…·Fernando García‐Moreno
BirthSeq isolates and analyzes cells based on their birth date across vertebrate tissues, enabling temporal studies of cell fate in development.
Irepan Salvador‐Martínez, Marco Grillo, Michalis Averof, Maximilian J. Telford
CeLaVi is a web-based tool for visualizing and interacting with cell lineages, integrating spatial distribution and cell properties.
Irepan Salvador‐Martínez, Marco Grillo, Michalis Averof, Maximilian J. Telford
This study uses simulations to evaluate the accuracy of CRISPR-based lineage reconstruction under various biological and technical conditions.
Damian Kao, Alvina Grace Lai, Evangelia Stamataki…·Aziz A. Aboobaker
The paper sequences and annotates the genome of Parhyale hawaiensis, identifying key genes for development, immunity, and lignocellulose digestion, providing a resource for comparative studies.