Author
Walter and Eliza Hall Institute of Medical ResearchORCID 0009-0006-8919-608XUnclaimed ORCID profile · follow to get notified of new preprints
6 papers
Recent·Most cited
Ashleigh N. Solano, Raymond K. H. Yip, Changqing Wang…·Matthew E. Ritchie
SpatialBench evaluates spatial transcriptomics platforms using a mouse spleen model, finding consistent biological signals but varying resolution across technologies.
Nick Moore, Callum J. Sargeant, Matthew John Wakefield…·Alan F. Rubin
CountESS provides a flexible, graphical pipeline for DMS analysis, supporting diverse workflows and input formats to generate variant scores.
Helena Lucia Crowell, Yixing Dong, Ilaria Billato…·Lukas M. Weber
The paper provides an open-source online book for analyzing spatial transcriptomics data using Bioconductor in R, with reproducible code and datasets.
Yang Xu, Callum J. Sargeant, Yue You…·Matthew E. Ritchie
stPipe provides a flexible R/Bioconductor pipeline for preprocessing spatial transcriptomics data from multiple platforms, enabling standardized analysis and benchmarking.
Shene Chiou, Aysha Al‐Ani, Yi Pan…·André L. Samson
The paper develops automated immunohistochemistry protocols to detect necroptotic pathway proteins in mouse and human tissues, revealing heterogeneity and disease-related changes in expression.
Mei R. M. Du, Changqing Wang, Charity W. Law…·Matthew E. Ritchie
The paper benchmarks spatial transcriptomics technologies using a multi-sample dataset from mouse spleen tissue, finding improved data quality with probe-based capture methods and CytAssist.