Author

A. Bateman

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Biochemistry· 1 Bioinformatics· 1 Biophysics· 1 Evolutionary Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 4 Approach:experimental assay· 4 Assay:proteomics· 4 Research Focus:cell type annotation· 2 Research Focus:database / resource· 2 Research Focus:host-pathogen & immune response· 2 Research Focus:protein folding & dynamics· 2 Approach:benchmark study· 1

Frequent Co-Authors

A. Lafita· 3 shared A. Alekseev· 1 shared A. Andreeva· 1 shared A. Game· 1 shared A. Guskov· 1 shared A. Hamosh· 1 shared A. M. Waterhouse· 1 shared A. N. St John· 1 shared

Activity by Year

2017-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 5 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersMicrobiology

A. Lafita

Mutual co-authors in cluster

Author profile →

8 papers

Recent·Most cited

A novel subgroup of light-driven sodium pumps with an additional Schiff base counterion

E. Podoliak, G. H. U. Lamm, A. Alekseev, E. Marin, A. V. Schellbach, D. A. Fedotov, A. Stetsenko, N. Maliar, G. Bourenkov, T. Balandin, C. Baeken, R. Astashkin, T. R. Schneider, A. Bateman, J. Wachtveitl, , K. Kovalev

The paper identifies a new subgroup of light-driven sodium pumps with an additional glutamic acid residue that reduces pH sensitivity for sodium transport.

bioRxiv · Oct 11, 2023Biophysics

What is hidden in the darkness? Deep-learning assisted large-scale protein family curation uncovers novel protein families and folds

J. Durairaj, A. M. Waterhouse, T. Mets, T. Brodiazhenko, M. Abdullah, G. Studer, M. Akdel, A. Andreeva, A. Bateman, T. Tenson, V. Hauryliuk, T. Schwede, J. Pereira

This work uses deep learning to uncover novel protein families and folds by analyzing sequence and structural data, adding new entries to Pfam and identifying a novel toxin-antitoxin system.

bioRxiv · Mar 14, 2023 · PreprintBioinformatics

EROS is a selective chaperone regulating the phagocyte NADPH oxidase and purinergic signalling

L. O. Randzavola, P. M. Mortimer, E. C. Garside, E. R. Dufficy, A. Schejtman, G. Roumelioti, L. Yu, M. Pardo, K. Spirohn, C. Tolley, C. Brandt, K. Harcourt, E. Nichols, M. Nahorski, G. Woods, , D. C. Thomas

This study identifies EROS as a chaperone essential for gp91phox maturation and P2X7 receptor function, revealing its role in immune responses and infection resistance.

bioRxiv · Sep 14, 2021Immunology

Periscope Proteins are variable length regulators of bacterial cell surface interactions

F. Whelan, A. Lafita, J. Gilburt, C. Degut, S. C. Griffiths, H. T. Jenkins, A. N. St John, E. Paci, J. W. B. Moir, M. J. Plevin, C. G. Baumann, A. Bateman, J. R. Potts

The paper identifies Periscope Proteins as variable-length bacterial surface regulators that influence host interactions through domain number variation.

bioRxiv · Dec 24, 2020Microbiology

Discovery of Fibrillar Adhesins across Bacterial Species

V. A. Monzon, A. Lafita, A. Bateman

The paper identifies and characterizes fibrillar adhesins across bacterial species, revealing their domain architecture and potential roles in host-pathogen interactions.

bioRxiv · Dec 7, 2020Microbiology

Thrombospondin module 1 domain (TSP1) of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers

E.-R. Xu, A. Lafita, A. Bateman, M. Hyvönen

The paper determines the crystal structure of the CCN3 TSP1 domain, revealing an atypical disulfide pattern and incomplete CWR layers, and revises TSP1 domain definitions.

bioRxiv · Sep 25, 2019Biochemistry

Sequence analysis allows functional annotation of tyrosine recombinases in prokaryotic genomes

G. Smyshlyaev, O. Barabas, A. Bateman

The paper analyzes tyrosine recombinases across prokaryotic genomes to classify their phylogenetic groups and predict new integrative and conjugative elements.

bioRxiv · Feb 6, 2019Evolutionary Biology

TOWARDS COORDINATED INTERNATIONAL SUPPORT OF CORE DATA RESOURCES FOR THE LIFE SCIENCES

W. Anderson, R. Apweiler, A. Bateman, G.A. Bauer, H. Berman, J.A. Blake, N. Blomberg, S.K. Burley, G. Cochrane, V. Di Francesco, T. Donohue, C. Durinx, A. Game, E.D. Green, T. Gojobori, , P.F. Lasko

The paper discusses the need for coordinated international funding to sustain core data resources in life sciences and presents considerations for a new funding model.

bioRxiv · Apr 27, 2017 · PreprintScientific Communication & Education