Author

A. Bucksch

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 5 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Assay:imaging· 3 Organism:plant (other)· 2 Organism:Arabidopsis· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

J. Lynch· 2 shared J. Williams· 2 shared S. Liu· 2 shared A. Atta-Boateng· 1 shared A. Baumgartner· 1 shared A. Edmonds· 1 shared A. F. Azihou· 1 shared A. Fletcher· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersPlant Biology

J. Lynch

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Author profile →

6 papers

Recent·Most cited

DIRT/μ - Automated extraction of root hair traits using combinatorial optimization

P. Pietrzyk, N. Phan-Udom, C. Chutoe, L. Pingault, A. Roy, M. Libault, P. Johns Saengwilai, A. Bucksch

DIRT/μ automatically extracts root hair traits from 2D images using combinatorial optimization, enabling precise and unbiased measurements of root hair length and density.

bioRxiv · Jan 18, 2024Plant Biology

CyVerse: Cyberinfrastructure for Open Science

T. L. Swetnam, P. B. Antin, R. Bartelme, A. Bucksch, D. Camhy, G. Chism, I. Choi, A. M. Cooksey, M. Cosi, C. Cowen, M. Culshaw-Maurer, R. Davey, S. Davey, U. Devisetty, T. Edgin, , J. Wregglesworth

The paper describes CyVerse, an open-source cyberinfrastructure platform for life sciences, and outlines a strategic blueprint for managing SaaS and IaC as free and open-source software.

bioRxiv · Jun 16, 2023Scientific Communication & Education

The soil microbiome reduces Striga infection of sorghum by modulation of host-derived signaling molecules and root development

D. Kawa, B. Thiombiano, M. Shimels, T. Taylor, A. Walmsley, H. E. Vahldick, M. F. Leite, Z. Musa, A. Bucksch, F. Dini-Andreote, A. J. Chen, J. Daksa, D. Etalo, T. Tessema, E. E. Kuramae, , S. M. Brady

This study shows that the soil microbiome reduces Striga infection in sorghum by inducing root suberization, aerenchyma formation, and degrading haustorium-inducing factors.

bioRxiv · Nov 6, 2022 · PreprintPlant Biology

OPEN leaf: an open-source cloud-based phenotyping system for tracking dynamic changes at leaf-specific resolution in Arabidopsis

L. G. A. Swartz, S. Liu, D. Dahlquist, E. S. Walter, S. Kramer, S. McInturf, A. Bucksch, D. Mendoza-Cozatl

OPEN leaf is an open-source cloud-based phenotyping system for tracking dynamic leaf-specific changes in Arabidopsis, demonstrating the utility of VIS sensors in high-throughput screens.

bioRxiv · Dec 17, 2021Plant Biology

DIRT/3D: 3D root phenotyping for field grown maize (Zea mays)

S. Liu, C. Barrow, M. T. Hanlon, J. Lynch, A. Bucksch

DIRT/3D is a 3D root phenotyping platform for field-grown maize that measures 18 root architecture traits with high accuracy and heritability, aiding in breeding for climate resilience.

bioRxiv · Jun 30, 2020Plant Biology

Morphological plant modeling: Unleashing geometric and topological potential within the plant sciences

A. Bucksch, A. Atta-Boateng, A. F. Azihou, M. Balduzzi, D. Battogtokh, A. Baumgartner, B. Binder, S. Braybrook, C. Chang, V. Coneva, T. DeWitt, A. Fletcher, M. Gehan, D. Hernan Diaz Martinez, L. Hong, , D. Chitwood

This paper discusses the importance of mathematical modeling in plant morphology and outlines challenges and opportunities for integrating geometric and topological approaches in plant science research and education.

bioRxiv · Feb 8, 2017Plant Biology