Author

J. Theze

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Research Focus:phylogenetics / evolution· 3 Assay:whole-genome sequencing· 3 Research Focus:host-pathogen & immune response· 2 Organism:human· 2 Organism:virus· 2 Organism:non-human primate· 1

Frequent Co-Authors

O. G. Pybus· 3 shared T. A. Bowden· 3 shared B. Gutierrez· 2 shared M. Escalera-Zamudio· 2 shared A. Ansari· 1 shared A. Chieppe· 1 shared A. Fabri· 1 shared A. Luiz de Abreu· 1 shared

Activity by Year

2017-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersEvolutionary Biology

O. G. Pybus

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Identification of site-specific evolutionary trajectories shared across human betacoronaviruses

M. Escalera-Zamudio, S. L. Kosakovsky Pond, N. Martinez de la Vina, B. Gutierrez, R. P. D. Inward, J. Theze, L. van Dorp, H. G. Castelan, T. A. Bowden, O. G. Pybus, R. J. G. Hulswit

The paper identifies site-specific evolutionary trajectories shared across human betacoronaviruses by analyzing mutations and positive selection in four viruses.

bioRxiv · May 24, 2021 · PreprintEvolutionary Biology

Global spread and evolutionary history of HCV subtype 3a

S.-K. Lin, N. De Maio, V. Pedergnana, C.-H. Wu, J. Theze, E. Barnes, A. Ansari

The paper uses host and virus genomic data to trace the global spread and evolutionary history of HCV subtype 3a, finding it originated in South Asia and spread through three independent events post-World War II.

bioRxiv · Feb 3, 2021 · PreprintEvolutionary Biology

Parallel Evolution in the Emergence of Highly Pathogenic Avian Influenza A Viruses

M. Escalera-Zamudio, M. Golden, B. Gutierrez, J. Theze, J. Russell Keown, L. Carrique, T. A. Bowden, O. G. Pybus

This study identifies parallel mutations in avian influenza viruses associated with high pathogenicity using phylogenetic and statistical methods.

bioRxiv · Aug 22, 2019Evolutionary Biology

Yellow fever virus spread in Rio de Janeiro and Espirito Santo, 2016-2019: Phylodynamic assessment to improve intervention strategies

M. Giovanetti, M. C. Lima de Mendonca, V. Fonseca, M. A. Mares-Guia, A. Fabri, J. Xavier, J. Goes de Jesus, T. Gräf, C. Damasceno dos Santos Rodrigues, C. Cardoso dos Santos, S. Alves Sampaio, F. Lowen Levy Chalhoub, F. Bruycker Nogueira, J. Theze, A. Pecego Martins Romano, , A. M. Bispo de Filippis

This study uses genomic sequencing of yellow fever virus from 2016-2019 to trace transmission routes and improve public health responses in Brazil.

bioRxiv · Jul 23, 2019 · PreprintMicrobiology

Molecular evolution, diversity and adaptation of H7N9 influenza A viruses in China

J. Lu, J. Raghwani, J. Wu, R. Pryce, T. A. Bowden, J. Theze, S. Huang, Y. Song, L. Zou, L. Liang, R. Bai, Y. Jin, P. Zhou, M. Kang, L. Yi, , C. Ke

The paper analyzes the evolution and adaptation of H7N9 influenza viruses in China, identifying lineage-specific mutations and high-pathogenicity strains.

bioRxiv · Jun 25, 2017Evolutionary Biology