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Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
6 papers
Recent·Most cited
E. M. Sim, W. Fong, C. Suster, J. E. Agius, S. Chandra, B. Suliman, Q. Wang, C. Ngo, C. Finemore, S. C.-A. Chen, K. Basile, V. Sintchenko
STECode automates virulence barcode generation for Shiga toxin-producing E. coli to assess pathogenic potential from sequencing data.
bioRxiv · May 7, 2024 · PreprintMicrobiology
K. Basile, J. E. Agius, W. Fong, K. McPhie, M. Fennel, D. Ko, L. Hueston, C. Lam, A. Arnott, S. C.-A. Chen, S. Maddocks, M. V. N. O Sullivan, D. Dwyer, V. Sintchenko, J. Kok, , CIDMLS COVID-19 Study Group
This study assesses the neutralizing antibody titres against SARS-CoV-2 variants Delta and Beta post-Pfizer-BioNTech vaccination, finding significant reductions compared to wild-type virus.
bioRxiv · Sep 24, 2023 · PreprintMicrobiology
K. Basile, R. J. Rockett, K. McPhie, M. Fennell, J. Johnson-Mackinnon, J. Agius, W. Fong, H. Rahman, D. Ko, L. Donavan, L. Hueston, C. Lam, A. Arnott, S. Chen, S. Maddocks, , J. Kok
This study shows that Pfizer-BioNTech vaccine boosting increases neutralizing antibodies against Omicron, but they are still lower than against the A.2.2 lineage.
bioRxiv · Dec 12, 2021 · PreprintMicrobiology
C. Lam, K.-A. Gray, M. Gall, R. Sadsad, A. Arnott, J. Johnson-Mackinnon, W. Fong, K. Basile, J. Kok, D. E. Dwyer, V. Sintchenko, R. J. Rockett
This study compares three SARS-CoV-2 sequencing methods for their ability to detect variants from low viral load samples, finding that ARTIC v3 is most sensitive.
bioRxiv · May 1, 2021Microbiology
R. J. Rockett, A. Arnott, C. Lam, R. Sadsad, V. Timms, K.-A. Gray, J.-S. Eden, S. L. Chang, M. Gall, J. Draper, E. Sim, N. L. Bachmann, I. Carter, K. Basile, R. Byun, , V. Sintchenko
The paper uses SARS-CoV-2 genome sequencing and agent-based modeling to estimate local transmission rates during the early stages of the COVID-19 outbreak in New South Wales.
bioRxiv · Apr 19, 2020 · PreprintMicrobiology
J.-S. Eden, R. Rockett, I. Carter, H. Rahman, J. de Ligt, J. Hadfield, M. Storey, X. Ren, R. Tulloch, K. Basile, J. Wells, R. Byun, N. Gliroy, M. V. O'Sullivan, V. Sintchenko, , J. Kok
The paper identifies a distinct SARS-CoV-2 clade linked to travellers returning from Iran to Australia and New Zealand through whole genome sequencing and phylogenetic analysis.
bioRxiv · Mar 15, 2020Microbiology