Author

M. Callaghan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Microbiology· 2 Cell Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:cell type annotation· 2 Organism:rat· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

A. M. Deutschbauer· 2 shared A. P. Arkin· 2 shared C. J. Essenburg· 2 shared C. R. Graveel· 2 shared E. A. Tovar· 2 shared M. N. Price· 2 shared M. R. Steensma· 2 shared P. S. Dischinger· 2 shared

Activity by Year

2018-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersMicrobiology

A. M. Deutschbauer

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Nf1 deficiency accelerates mammary development and promotes luminal-basal plasticity

E. A. Tovar, M. Arumugam, C. J. Essenburg, P. S. Dischinger, J. L. Grit, M. Callaghan, R. T. C. Sheridan, L. Turner, C. R. Esquibel, K. Feenstra, Z. Madaj, I. Beddows, C. R. Graveel, M. R. Steensma

This study shows that Nf1 deficiency in rats accelerates mammary development and promotes luminal-basal plasticity and EMT-mediated invasion.

bioRxiv · Dec 22, 2022 · PreprintCancer Biology

SpheroidAnalyseR - an online platform for analysing data from 3D spheroids or organoids grown in 96-well plates

R. Barrow, J. N. Wilkinson, Y. He, M. Callaghan, A. Bruning-Richardson, M. Dunning, L. F. Stead

SpheroidAnalyseR is an R Shiny app that enables fast, automated analysis of 3D spheroid or organoid growth data from 96-well plates, improving efficiency and reproducibility.

bioRxiv · Feb 18, 2022Cell Biology

Defining the toxicity limits on microbial range in a metal-contaminated aquifer

H. K. Carlson, M. N. Price, M. Callaghan, A. Aaring, R. Chakraborty, H. Liu, A. P. Arkin, A. M. Deutschbauer

The paper identifies toxic inorganic ions that inhibit sensitive microorganisms and favor Rhodanobacter in a metal-contaminated aquifer.

bioRxiv · Aug 9, 2018Microbiology

Dub-seq: dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits

V. K. Mutalik, P. S. Novichkov, M. N. Price, T. K. Owens, M. Callaghan, S. Carim, A. M. Deutschbauer, A. P. Arkin

Dub-seq enables high-throughput overexpression screens in E. coli by combining shotgun expression libraries with DNA barcode sequencing to identify genes with gain-of-function phenotypes.

bioRxiv · Aug 8, 2018Microbiology

NF1 deficiency correlates with estrogen receptor signaling and diminished survival in breast cancer

P. S. Dischinger, E. A. Tovar, C. J. Essenburg, Z. B. Madaj, E. E. Gardner, M. Callaghan, A. N. Turner, A. K. Challa, T. Kempston, B. Eagleson, R. A. Kesterson, R. T. Bronson, M. J. Bowman, C. R. Graveel, M. R. Steensma

This study shows NF1 deficiency in breast cancer correlates with estrogen receptor signaling and poor survival, using rat models and human genomic data.

bioRxiv · Feb 27, 2018Cancer Biology